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Anatomical structures, cell types and biomarkers of the Human Reference Atlas.
Börner K, Teichmann SA, Quardokus EM, Gee JC, Browne K, Osumi-Sutherland D, Herr BW 2nd, Bueckle A, Paul H, Haniffa M, Jardine L, Bernard A, Ding SL, Miller JA, Lin S, Halushka MK, Boppana A, Longacre TA, Hickey J, Lin Y, Valerius MT, He Y, Pryhuber G, Sun X, Jorgensen M, Radtke AJ, Wasserfall C, Ginty F, Ho J, Sunshine J, Beuschel RT, Brusko M, Lee S, Malhotra R, Jain S, Weber G. Börner K, et al. Among authors: halushka mk. Nat Cell Biol. 2021 Nov;23(11):1117-1128. doi: 10.1038/s41556-021-00788-6. Epub 2021 Nov 8. Nat Cell Biol. 2021. PMID: 34750582 Free PMC article. Review.
Consistent RNA sequencing contamination in GTEx and other data sets.
Nieuwenhuis TO, Yang SY, Verma RX, Pillalamarri V, Arking DE, Rosenberg AZ, McCall MN, Halushka MK. Nieuwenhuis TO, et al. Among authors: halushka mk. Nat Commun. 2020 Apr 22;11(1):1933. doi: 10.1038/s41467-020-15821-9. Nat Commun. 2020. PMID: 32321923 Free PMC article.
In Silico Analysis of Micro-RNA Sequencing Data.
Aparicio-Puerta E, Fromm B, Hackenberg M, Halushka MK. Aparicio-Puerta E, et al. Among authors: halushka mk. Methods Mol Biol. 2021;2284:231-251. doi: 10.1007/978-1-0716-1307-8_13. Methods Mol Biol. 2021. PMID: 33835446
MicroRNA profiling of diverse endothelial cell types.
McCall MN, Kent OA, Yu J, Fox-Talbot K, Zaiman AL, Halushka MK. McCall MN, et al. Among authors: halushka mk. BMC Med Genomics. 2011 Nov 2;4:78. doi: 10.1186/1755-8794-4-78. BMC Med Genomics. 2011. PMID: 22047531 Free PMC article.
A draft map of the human proteome.
Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A. Kim MS, et al. Among authors: halushka mk. Nature. 2014 May 29;509(7502):575-81. doi: 10.1038/nature13302. Nature. 2014. PMID: 24870542 Free PMC article.
Big Strides in Cellular MicroRNA Expression.
Halushka MK, Fromm B, Peterson KJ, McCall MN. Halushka MK, et al. Trends Genet. 2018 Mar;34(3):165-167. doi: 10.1016/j.tig.2017.12.015. Epub 2018 Jan 18. Trends Genet. 2018. PMID: 29361313 Free PMC article. Review.
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: halushka mk. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
226 results