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Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: halushka mk. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
Big Strides in Cellular MicroRNA Expression.
Halushka MK, Fromm B, Peterson KJ, McCall MN. Halushka MK, et al. Trends Genet. 2018 Mar;34(3):165-167. doi: 10.1016/j.tig.2017.12.015. Epub 2018 Jan 18. Trends Genet. 2018. PMID: 29361313 Free PMC article. Review.
In Silico Analysis of Micro-RNA Sequencing Data.
Aparicio-Puerta E, Fromm B, Hackenberg M, Halushka MK. Aparicio-Puerta E, et al. Among authors: halushka mk. Methods Mol Biol. 2021;2284:231-251. doi: 10.1007/978-1-0716-1307-8_13. Methods Mol Biol. 2021. PMID: 33835446
MicroRNA profiling of diverse endothelial cell types.
McCall MN, Kent OA, Yu J, Fox-Talbot K, Zaiman AL, Halushka MK. McCall MN, et al. Among authors: halushka mk. BMC Med Genomics. 2011 Nov 2;4:78. doi: 10.1186/1755-8794-4-78. BMC Med Genomics. 2011. PMID: 22047531 Free PMC article.
A critical evaluation of microRNA biomarkers in non-neoplastic disease.
Haider BA, Baras AS, McCall MN, Hertel JA, Cornish TC, Halushka MK. Haider BA, et al. Among authors: halushka mk. PLoS One. 2014 Feb 26;9(2):e89565. doi: 10.1371/journal.pone.0089565. eCollection 2014. PLoS One. 2014. PMID: 24586876 Free PMC article.
226 results