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A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions.
Wallace RJ, Sasson G, Garnsworthy PC, Tapio I, Gregson E, Bani P, Huhtanen P, Bayat AR, Strozzi F, Biscarini F, Snelling TJ, Saunders N, Potterton SL, Craigon J, Minuti A, Trevisi E, Callegari ML, Cappelli FP, Cabezas-Garcia EH, Vilkki J, Pinares-Patino C, Fliegerová KO, Mrázek J, Sechovcová H, Kopečný J, Bonin A, Boyer F, Taberlet P, Kokou F, Halperin E, Williams JL, Shingfield KJ, Mizrahi I. Wallace RJ, et al. Among authors: halperin e. Sci Adv. 2019 Jul 3;5(7):eaav8391. doi: 10.1126/sciadv.aav8391. eCollection 2019 Jul. Sci Adv. 2019. PMID: 31281883 Free PMC article.
FEAST: fast expectation-maximization for microbial source tracking.
Shenhav L, Thompson M, Joseph TA, Briscoe L, Furman O, Bogumil D, Mizrahi I, Pe'er I, Halperin E. Shenhav L, et al. Among authors: halperin e. Nat Methods. 2019 Jul;16(7):627-632. doi: 10.1038/s41592-019-0431-x. Epub 2019 Jun 10. Nat Methods. 2019. PMID: 31182859 Free PMC article.
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics.
Martino C, Shenhav L, Marotz CA, Armstrong G, McDonald D, Vázquez-Baeza Y, Morton JT, Jiang L, Dominguez-Bello MG, Swafford AD, Halperin E, Knight R. Martino C, et al. Among authors: halperin e. Nat Biotechnol. 2021 Feb;39(2):165-168. doi: 10.1038/s41587-020-0660-7. Epub 2020 Aug 31. Nat Biotechnol. 2021. PMID: 32868914 Free PMC article.
Compositional Lotka-Volterra describes microbial dynamics in the simplex.
Joseph TA, Shenhav L, Xavier JB, Halperin E, Pe'er I. Joseph TA, et al. Among authors: halperin e. PLoS Comput Biol. 2020 May 29;16(5):e1007917. doi: 10.1371/journal.pcbi.1007917. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32469867 Free PMC article.
509 results