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Sustainable data analysis with Snakemake.
Mölder F, Jablonski KP, Letcher B, Hall MB, Tomkins-Tinch CH, Sochat V, Forster J, Lee S, Twardziok SO, Kanitz A, Wilm A, Holtgrewe M, Rahmann S, Nahnsen S, Köster J. Mölder F, et al. Among authors: hall mb. F1000Res. 2021 Jan 18;10:33. doi: 10.12688/f1000research.29032.2. eCollection 2021. F1000Res. 2021. PMID: 34035898 Free PMC article.
Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs.
Colquhoun RM, Hall MB, Lima L, Roberts LW, Malone KM, Hunt M, Letcher B, Hawkey J, George S, Pankhurst L, Iqbal Z. Colquhoun RM, et al. Among authors: hall mb. Genome Biol. 2021 Sep 14;22(1):267. doi: 10.1186/s13059-021-02473-1. Genome Biol. 2021. PMID: 34521456 Free PMC article.
Freshwater monitoring by nanopore sequencing.
Urban L, Holzer A, Baronas JJ, Hall MB, Braeuninger-Weimer P, Scherm MJ, Kunz DJ, Perera SN, Martin-Herranz DE, Tipper ET, Salter SJ, Stammnitz MR. Urban L, et al. Among authors: hall mb. Elife. 2021 Jan 19;10:e61504. doi: 10.7554/eLife.61504. Elife. 2021. PMID: 33461660 Free PMC article.
Evaluation of Nanopore sequencing for Mycobacterium tuberculosis drug susceptibility testing and outbreak investigation: a genomic analysis.
Hall MB, Rabodoarivelo MS, Koch A, Dippenaar A, George S, Grobbelaar M, Warren R, Walker TM, Cox H, Gagneux S, Crook D, Peto T, Rakotosamimanana N, Grandjean Lapierre S, Iqbal Z. Hall MB, et al. Lancet Microbe. 2023 Feb;4(2):e84-e92. doi: 10.1016/S2666-5247(22)00301-9. Epub 2022 Dec 19. Lancet Microbe. 2023. PMID: 36549315 Free PMC article.
Concordance of targeted and whole genome sequencing for Mycobacterium tuberculosis genotypic drug susceptibility testing.
Cloutier Charette W, Rabodoarivelo MS, Point F, Knoblauch AM, Andrianomanana FR, Hall MB, Iqbal Z, Supply P, Martin A, Rakotosamimanana N, Grandjean Lapierre S. Cloutier Charette W, et al. Among authors: hall mb. Diagn Microbiol Infect Dis. 2024 Jun;109(2):116249. doi: 10.1016/j.diagmicrobio.2024.116249. Epub 2024 Mar 12. Diagn Microbiol Infect Dis. 2024. PMID: 38537504 Free article.
312 results