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Design of protein-binding proteins from the target structure alone.
Nature. 2022 May;605(7910):551-560. doi: 10.1038/s41586-022-04654-9. Epub 2022 Mar 24.
Nature. 2022.
PMID: 35332283
Free PMC article.
Perturbing the energy landscape for improved packing during computational protein design.
Maguire JB, Haddox HK, Strickland D, Halabiya SF, Coventry B, Griffin JR, Pulavarti SVSRK, Cummins M, Thieker DF, Klavins E, Szyperski T, DiMaio F, Baker D, Kuhlman B.
Maguire JB, et al. Among authors: halabiya sf.
Proteins. 2021 Apr;89(4):436-449. doi: 10.1002/prot.26030. Epub 2020 Dec 11.
Proteins. 2021.
PMID: 33249652
Free PMC article.
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Aquarium: open-source laboratory software for design, execution and data management.
Vrana J, de Lange O, Yang Y, Newman G, Saleem A, Miller A, Cordray C, Halabiya S, Parks M, Lopez E, Goldberg S, Keller B, Strickland D, Klavins E.
Vrana J, et al. Among authors: halabiya s.
Synth Biol (Oxf). 2021 Jan 30;6(1):ysab006. doi: 10.1093/synbio/ysab006. eCollection 2021.
Synth Biol (Oxf). 2021.
PMID: 34151028
Free PMC article.
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De novo design of luciferases using deep learning.
Yeh AH, Norn C, Kipnis Y, Tischer D, Pellock SJ, Evans D, Ma P, Lee GR, Zhang JZ, Anishchenko I, Coventry B, Cao L, Dauparas J, Halabiya S, DeWitt M, Carter L, Houk KN, Baker D.
Yeh AH, et al. Among authors: halabiya s.
Nature. 2023 Feb;614(7949):774-780. doi: 10.1038/s41586-023-05696-3. Epub 2023 Feb 22.
Nature. 2023.
PMID: 36813896
Free PMC article.
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