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261 results

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Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents.
Haile S, Nikiforuk AM, Pandoh PK, Twa DDW, Smailus DE, Nguyen J, Pleasance S, Wong A, Zhao Y, Eisler D, Moksa M, Cao Q, Wong M, Su E, Krzywinski M, Nelson J, Mungall AJ, Tsang F, Prentice LM, Jassem A, Manges AR, Jones SJM, Coope RJ, Prystajecky N, Marra MA, Krajden M, Hirst M. Haile S, et al. J Virol Methods. 2022 Jan;299:114339. doi: 10.1016/j.jviromet.2021.114339. Epub 2021 Oct 20. J Virol Methods. 2022. PMID: 34687784 Free PMC article.
Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis.
Haile S, Pandoh P, McDonald H, Corbett RD, Tsao P, Kirk H, MacLeod T, Jones M, Bilobram S, Brooks D, Smailus D, Steidl C, Scott DW, Bala M, Hirst M, Miller D, Moore RA, Mungall AJ, Coope RJ, Ma Y, Zhao Y, Holt RA, Jones SJ, Marra MA. Haile S, et al. PLoS One. 2017 Jun 1;12(6):e0178706. doi: 10.1371/journal.pone.0178706. eCollection 2017. PLoS One. 2017. PMID: 28570594 Free PMC article.
Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.
Haile S, Corbett RD, Bilobram S, Bye MH, Kirk H, Pandoh P, Trinh E, MacLeod T, McDonald H, Bala M, Miller D, Novik K, Coope RJ, Moore RA, Zhao Y, Mungall AJ, Ma Y, Holt RA, Jones SJ, Marra MA. Haile S, et al. Nucleic Acids Res. 2019 Jan 25;47(2):e12. doi: 10.1093/nar/gky1142. Nucleic Acids Res. 2019. PMID: 30418619 Free PMC article.
A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood.
Pandoh PK, Corbett RD, McDonald H, Alcaide M, Kirk H, Trinh E, Haile S, MacLeod T, Smailus D, Bilobram S, Mungall AJ, Ma Y, Moore RA, Coope R, Zhao Y, Jones SJ, Holt RA, Karsan A, Morin RD, Marra MA. Pandoh PK, et al. Among authors: haile s. Biotechniques. 2019 Feb;66(2):85-92. doi: 10.2144/btn-2018-0148. Biotechniques. 2019. PMID: 30744412 Free article.
Whole-slide laser microdissection for tumour enrichment.
Coope RJ, Schlosser C, Corbett RD, Pleasance S, Tessier-Cloutier B, Pandoh P, Kirk H, Haile S, Zhao Y, Mungall AJ, Marra MA. Coope RJ, et al. Among authors: haile s. J Pathol. 2021 Feb;253(2):225-233. doi: 10.1002/path.5575. Epub 2020 Dec 9. J Pathol. 2021. PMID: 33135777
A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells.
Haile S, Corbett RD, LeBlanc VG, Wei L, Pleasance S, Bilobram S, Nip KM, Brown K, Trinh E, Smith J, Trinh DL, Bala M, Chuah E, Coope RJN, Moore RA, Mungall AJ, Mungall KL, Zhao Y, Hirst M, Aparicio S, Birol I, Jones SJM, Marra MA. Haile S, et al. Front Genet. 2021 Jun 3;12:665888. doi: 10.3389/fgene.2021.665888. eCollection 2021. Front Genet. 2021. PMID: 34149808 Free PMC article.
Novel biomarkers for prostate cancer including noncoding transcripts.
Romanuik TL, Ueda T, Le N, Haile S, Yong TM, Thomson T, Vessella RL, Sadar MD. Romanuik TL, et al. Among authors: haile s. Am J Pathol. 2009 Dec;175(6):2264-76. doi: 10.2353/ajpath.2009.080868. Epub 2009 Nov 5. Am J Pathol. 2009. PMID: 19893039 Free PMC article.
261 results