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Pangenome graph layout by Path-Guided Stochastic Gradient Descent.
Heumos S, Guarracino A, Schmelzle JM, Li J, Zhang Z, Hagmann J, Nahnsen S, Prins P, Garrison E. Heumos S, et al. Among authors: hagmann j. bioRxiv [Preprint]. 2023 Oct 17:2023.09.22.558964. doi: 10.1101/2023.09.22.558964. bioRxiv. 2023. PMID: 37790531 Free PMC article. Preprint.
MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data.
Hüther P, Hagmann J, Nunn A, Kakoulidou I, Pisupati R, Langenberger D, Weigel D, Johannes F, Schultheiss SJ, Becker C. Hüther P, et al. Among authors: hagmann j. Quant Plant Biol. 2022 Sep 26;3:e19. doi: 10.1017/qpb.2022.14. eCollection 2022. Quant Plant Biol. 2022. PMID: 37077980 Free PMC article.
Building pangenome graphs.
Garrison E, Guarracino A, Heumos S, Villani F, Bao Z, Tattini L, Hagmann J, Vorbrugg S, Marco-Sola S, Kubica C, Ashbrook DG, Thorell K, Rusholme-Pilcher RL, Liti G, Rudbeck E, Nahnsen S, Yang Z, Moses MN, Nobrega FL, Wu Y, Chen H, de Ligt J, Sudmant PH, Soranzo N, Colonna V, Williams RW, Prins P. Garrison E, et al. Among authors: hagmann j. bioRxiv [Preprint]. 2023 Apr 6:2023.04.05.535718. doi: 10.1101/2023.04.05.535718. bioRxiv. 2023. PMID: 37066137 Free PMC article. Preprint.
Methylation of CpG 5962 in L1 of the human papillomavirus 16 genome as a potential predictive marker for viral persistence: A prospective large cohort study using cervical swab samples.
Fertey J, Hagmann J, Ruscheweyh HJ, Munk C, Kjaer S, Huson D, Haedicke-Jarboui J, Stubenrauch F, Iftner T. Fertey J, et al. Among authors: hagmann j. Cancer Med. 2020 Feb;9(3):1058-1068. doi: 10.1002/cam4.2771. Epub 2019 Dec 19. Cancer Med. 2020. PMID: 31856411 Free PMC article.
RPW8/HR repeats control NLR activation in Arabidopsis thaliana.
Barragan CA, Wu R, Kim ST, Xi W, Habring A, Hagmann J, Van de Weyer AL, Zaidem M, Ho WWH, Wang G, Bezrukov I, Weigel D, Chae E. Barragan CA, et al. Among authors: hagmann j. PLoS Genet. 2019 Jul 25;15(7):e1008313. doi: 10.1371/journal.pgen.1008313. eCollection 2019 Jul. PLoS Genet. 2019. PMID: 31344025 Free PMC article.
80 results