Hafner M - Search Results

1

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Hafner M, et al. Cell. 2010 Apr 2;141(1):129-41. doi: 10.1016/j.cell.2010.03.009. Cell. 2010. PMID: 20371350 Free PMC article.

2

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing.

Hafner M, Landgraf P, Ludwig J, Rice A, Ojo T, Lin C, Holoch D, Lim C, Tuschl T. Hafner M, et al. Methods. 2008 Jan;44(1):3-12. doi: 10.1016/j.ymeth.2007.09.009. Methods. 2008. PMID: 18158127 Free PMC article. Review.

3

Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs.

Landthaler M, Gaidatzis D, Rothballer A, Chen PY, Soll SJ, Dinic L, Ojo T, Hafner M, Zavolan M, Tuschl T. Landthaler M, et al. Among authors: hafner m. RNA. 2008 Dec;14(12):2580-96. doi: 10.1261/rna.1351608. Epub 2008 Oct 31. RNA. 2008. PMID: 18978028 Free PMC article.

4

DGCR8-dependent microRNA biogenesis is essential for skin development.

Yi R, Pasolli HA, Landthaler M, Hafner M, Ojo T, Sheridan R, Sander C, O'Carroll D, Stoffel M, Tuschl T, Fuchs E. Yi R, et al. Among authors: hafner m. Proc Natl Acad Sci U S A. 2009 Jan 13;106(2):498-502. doi: 10.1073/pnas.0810766105. Epub 2008 Dec 29. Proc Natl Acad Sci U S A. 2009. PMID: 19114655 Free PMC article.

5

miRNA in situ hybridization in formaldehyde and EDC-fixed tissues.

Pena JT, Sohn-Lee C, Rouhanifard SH, Ludwig J, Hafner M, Mihailovic A, Lim C, Holoch D, Berninger P, Zavolan M, Tuschl T. Pena JT, et al. Among authors: hafner m. Nat Methods. 2009 Feb;6(2):139-41. doi: 10.1038/nmeth.1294. Epub 2009 Jan 11. Nat Methods. 2009. PMID: 19137005 Free PMC article.

6

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Hafner M, et al. J Vis Exp. 2010 Jul 2;(41):2034. doi: 10.3791/2034. J Vis Exp. 2010. PMID: 20644507 Free PMC article.

7

Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions.

Wang H, Zhang X, Liu J, Kiba T, Woo J, Ojo T, Hafner M, Tuschl T, Chua NH, Wang XJ. Wang H, et al. Among authors: hafner m. Plant J. 2011 Jul;67(2):292-304. doi: 10.1111/j.1365-313X.2011.04594.x. Epub 2011 May 10. Plant J. 2011. PMID: 21457371 Free PMC article.

8

MicroRNA sequence and expression analysis in breast tumors by deep sequencing.

Farazi TA, Horlings HM, Ten Hoeve JJ, Mihailovic A, Halfwerk H, Morozov P, Brown M, Hafner M, Reyal F, van Kouwenhove M, Kreike B, Sie D, Hovestadt V, Wessels LF, van de Vijver MJ, Tuschl T. Farazi TA, et al. Among authors: hafner m. Cancer Res. 2011 Jul 1;71(13):4443-53. doi: 10.1158/0008-5472.CAN-11-0608. Epub 2011 May 17. Cancer Res. 2011. PMID: 21586611 Free PMC article.

9

Small RNA sequencing and functional characterization reveals MicroRNA-143 tumor suppressor activity in liposarcoma.

Ugras S, Brill E, Jacobsen A, Hafner M, Socci ND, Decarolis PL, Khanin R, O'Connor R, Mihailovic A, Taylor BS, Sheridan R, Gimble JM, Viale A, Crago A, Antonescu CR, Sander C, Tuschl T, Singer S. Ugras S, et al. Among authors: hafner m. Cancer Res. 2011 Sep 1;71(17):5659-69. doi: 10.1158/0008-5472.CAN-11-0890. Epub 2011 Jun 21. Cancer Res. 2011. PMID: 21693658 Free PMC article.

10

Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.

Mukherjee N, Corcoran DL, Nusbaum JD, Reid DW, Georgiev S, Hafner M, Ascano M Jr, Tuschl T, Ohler U, Keene JD. Mukherjee N, et al. Among authors: hafner m. Mol Cell. 2011 Aug 5;43(3):327-39. doi: 10.1016/j.molcel.2011.06.007. Epub 2011 Jun 30. Mol Cell. 2011. PMID: 21723170 Free PMC article.

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