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sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.
Aparicio-Puerta E, Gómez-Martín C, Giannoukakos S, Medina JM, Scheepbouwer C, García-Moreno A, Carmona-Saez P, Fromm B, Pegtel M, Keller A, Marchal JA, Hackenberg M. Aparicio-Puerta E, et al. Among authors: hackenberg m. Nucleic Acids Res. 2022 Jul 5;50(W1):W710-W717. doi: 10.1093/nar/gkac363. Nucleic Acids Res. 2022. PMID: 35556129 Free PMC article.
sRNAtoolbox: an integrated collection of small RNA research tools.
Rueda A, Barturen G, Lebrón R, Gómez-Martín C, Alganza Á, Oliver JL, Hackenberg M. Rueda A, et al. Among authors: hackenberg m. Nucleic Acids Res. 2015 Jul 1;43(W1):W467-73. doi: 10.1093/nar/gkv555. Epub 2015 May 27. Nucleic Acids Res. 2015. PMID: 26019179 Free PMC article.
NGSmethDB 2017: enhanced methylomes and differential methylation.
Lebrón R, Gómez-Martín C, Carpena P, Bernaola-Galván P, Barturen G, Hackenberg M, Oliver JL. Lebrón R, et al. Among authors: hackenberg m. Nucleic Acids Res. 2017 Jan 4;45(D1):D97-D103. doi: 10.1093/nar/gkw996. Epub 2016 Oct 27. Nucleic Acids Res. 2017. PMID: 27794041 Free PMC article.
sRNAtoolboxVM: Small RNA Analysis in a Virtual Machine.
Gómez-Martín C, Lebrón R, Rueda A, Oliver JL, Hackenberg M. Gómez-Martín C, et al. Among authors: hackenberg m. Methods Mol Biol. 2017;1580:149-174. doi: 10.1007/978-1-4939-6866-4_12. Methods Mol Biol. 2017. PMID: 28439833
Mesenchymal stem cell's secretome promotes selective enrichment of cancer stem-like cells with specific cytogenetic profile.
Jiménez G, Hackenberg M, Catalina P, Boulaiz H, Griñán-Lisón C, García MÁ, Perán M, López-Ruiz E, Ramírez A, Morata-Tarifa C, Carrasco E, Aguilera M, Marchal JA. Jiménez G, et al. Among authors: hackenberg m. Cancer Lett. 2018 Aug 10;429:78-88. doi: 10.1016/j.canlet.2018.04.042. Epub 2018 May 5. Cancer Lett. 2018. PMID: 29733965
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression.
Aparicio-Puerta E, Lebrón R, Rueda A, Gómez-Martín C, Giannoukakos S, Jaspez D, Medina JM, Zubkovic A, Jurak I, Fromm B, Marchal JA, Oliver J, Hackenberg M. Aparicio-Puerta E, et al. Among authors: hackenberg m. Nucleic Acids Res. 2019 Jul 2;47(W1):W530-W535. doi: 10.1093/nar/gkz415. Nucleic Acids Res. 2019. PMID: 31114926 Free PMC article.
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: hackenberg m. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
108 results