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REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A. Sarkans U, et al. Among authors: heriche jk. Nat Methods. 2021 Dec;18(12):1418-1422. doi: 10.1038/s41592-021-01166-8. Nat Methods. 2021. PMID: 34021280 Free PMC article.
Visualizing biological data-now and in the future.
O'Donoghue SI, Gavin AC, Gehlenborg N, Goodsell DS, Hériché JK, Nielsen CB, North C, Olson AJ, Procter JB, Shattuck DW, Walter T, Wong B. O'Donoghue SI, et al. Among authors: heriche jk. Nat Methods. 2010 Mar;7(3 Suppl):S2-4. doi: 10.1038/nmeth.f.301. Nat Methods. 2010. PMID: 20195254
Visualization of image data from cells to organisms.
Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK. Walter T, et al. Among authors: heriche jk. Nat Methods. 2010 Mar;7(3 Suppl):S26-41. doi: 10.1038/nmeth.1431. Nat Methods. 2010. PMID: 20195255 Free PMC article. Review.
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.
Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, Satagopam V, Schmitz MH, Chapuis C, Gerlich DW, Schneider R, Eils R, Huber W, Peters JM, Hyman AA, Durbin R, Pepperkok R, Ellenberg J. Neumann B, et al. Among authors: heriche jk. Nature. 2010 Apr 1;464(7289):721-7. doi: 10.1038/nature08869. Nature. 2010. PMID: 20360735 Free PMC article.
Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation.
Hériché JK, Lees JG, Morilla I, Walter T, Petrova B, Roberti MJ, Hossain MJ, Adler P, Fernández JM, Krallinger M, Haering CH, Vilo J, Valencia A, Ranea JA, Orengo C, Ellenberg J. Hériché JK, et al. Mol Biol Cell. 2014 Aug 15;25(16):2522-36. doi: 10.1091/mbc.E13-04-0221. Epub 2014 Jun 18. Mol Biol Cell. 2014. PMID: 24943848 Free PMC article.
A 3D cellular context for the macromolecular world.
Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ. Patwardhan A, et al. Among authors: heriche jk. Nat Struct Mol Biol. 2014 Oct;21(10):841-5. doi: 10.1038/nsmb.2897. Nat Struct Mol Biol. 2014. PMID: 25289590 Free PMC article.
FUN-L: gene prioritization for RNAi screens.
Lees JG, Hériché JK, Morilla I, Fernández JM, Adler P, Krallinger M, Vilo J, Valencia A, Ellenberg J, Ranea JA, Orengo C. Lees JG, et al. Among authors: heriche jk. Bioinformatics. 2015 Jun 15;31(12):2052-3. doi: 10.1093/bioinformatics/btv073. Epub 2015 Feb 8. Bioinformatics. 2015. PMID: 25667547
The cellular microscopy phenotype ontology.
Jupp S, Malone J, Burdett T, Heriche JK, Williams E, Ellenberg J, Parkinson H, Rustici G. Jupp S, et al. Among authors: heriche jk. J Biomed Semantics. 2016 May 18;7:28. doi: 10.1186/s13326-016-0074-0. eCollection 2016. J Biomed Semantics. 2016. PMID: 27195102 Free PMC article.
49 results