Häkkinen A - Search Results

1

Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli.

Oliveira SM, Neeli-Venkata R, Goncalves NS, Santinha JA, Martins L, Tran H, Mäkelä J, Gupta A, Barandas M, Häkkinen A, Lloyd-Price J, Fonseca JM, Ribeiro AS. Oliveira SM, et al. Among authors: hakkinen a. Mol Microbiol. 2016 Feb;99(4):686-99. doi: 10.1111/mmi.13257. Epub 2015 Nov 17. Mol Microbiol. 2016. PMID: 26507787 Free article.

2

Asymmetric disposal of individual protein aggregates in Escherichia coli, one aggregate at a time.

Lloyd-Price J, Häkkinen A, Kandhavelu M, Marques IJ, Chowdhury S, Lihavainen E, Yli-Harja O, Ribeiro AS. Lloyd-Price J, et al. Among authors: hakkinen a. J Bacteriol. 2012 Apr;194(7):1747-52. doi: 10.1128/JB.06500-11. Epub 2012 Jan 27. J Bacteriol. 2012. PMID: 22287517 Free PMC article.

3

CellAging: a tool to study segregation and partitioning in division in cell lineages of Escherichia coli.

Häkkinen A, Muthukrishnan AB, Mora A, Fonseca JM, Ribeiro AS. Häkkinen A, et al. Bioinformatics. 2013 Jul 1;29(13):1708-9. doi: 10.1093/bioinformatics/btt194. Epub 2013 Apr 23. Bioinformatics. 2013. PMID: 23613488

4

Single-cell kinetics of a repressilator when implemented in a single-copy plasmid.

Oliveira SM, Chandraseelan JG, Häkkinen A, Goncalves NS, Yli-Harja O, Startceva S, Ribeiro AS. Oliveira SM, et al. Among authors: hakkinen a. Mol Biosyst. 2015 Jul;11(7):1939-45. doi: 10.1039/c5mb00012b. Mol Biosyst. 2015. PMID: 25923804

5

Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements.

Oliveira SM, Häkkinen A, Lloyd-Price J, Tran H, Kandavalli V, Ribeiro AS. Oliveira SM, et al. Among authors: hakkinen a. PLoS Comput Biol. 2016 Oct 28;12(10):e1005174. doi: 10.1371/journal.pcbi.1005174. eCollection 2016 Oct. PLoS Comput Biol. 2016. PMID: 27792724 Free PMC article.

6

In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps.

Kandhavelu M, Mannerström H, Gupta A, Häkkinen A, Lloyd-Price J, Yli-Harja O, Ribeiro AS. Kandhavelu M, et al. Among authors: hakkinen a. BMC Syst Biol. 2011 Sep 25;5:149. doi: 10.1186/1752-0509-5-149. BMC Syst Biol. 2011. PMID: 21943372 Free PMC article.

7

Evolving kinetics of gene expression in stochastic environments.

Häkkinen A, Ribeiro AS. Häkkinen A, et al. Comput Biol Chem. 2012 Apr;37:11-6. doi: 10.1016/j.compbiolchem.2012.02.002. Epub 2012 Feb 22. Comput Biol Chem. 2012. PMID: 22410387

8

Effects of gene length on the dynamics of gene expression.

Ribeiro AS, Häkkinen A, Lloyd-Price J. Ribeiro AS, et al. Among authors: hakkinen a. Comput Biol Chem. 2012 Dec;41:1-9. doi: 10.1016/j.compbiolchem.2012.10.002. Epub 2012 Oct 22. Comput Biol Chem. 2012. PMID: 23142668

9

Effects of temperature on the dynamics of the LacI-TetR-CI repressilator.

Chandraseelan JG, Oliveira SM, Häkkinen A, Tran H, Potapov I, Sala A, Kandhavelu M, Ribeiro AS. Chandraseelan JG, et al. Among authors: hakkinen a. Mol Biosyst. 2013 Dec;9(12):3117-23. doi: 10.1039/c3mb70203k. Epub 2013 Oct 8. Mol Biosyst. 2013. PMID: 24104727

10

Estimation of fluorescence-tagged RNA numbers from spot intensities.

Häkkinen A, Kandhavelu M, Garasto S, Ribeiro AS. Häkkinen A, et al. Bioinformatics. 2014 Apr 15;30(8):1146-1153. doi: 10.1093/bioinformatics/btt766. Epub 2014 Jan 2. Bioinformatics. 2014. PMID: 24389660

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