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BioJava 5: A community driven open-source bioinformatics library.
Lafita A, Bliven S, Prlić A, Guzenko D, Rose PW, Bradley A, Pavan P, Myers-Turnbull D, Valasatava Y, Heuer M, Larson M, Burley SK, Duarte JM. Lafita A, et al. Among authors: guzenko d. PLoS Comput Biol. 2019 Feb 8;15(2):e1006791. doi: 10.1371/journal.pcbi.1006791. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30735498 Free PMC article.
Real time structural search of the Protein Data Bank.
Guzenko D, Burley SK, Duarte JM. Guzenko D, et al. PLoS Comput Biol. 2020 Jul 8;16(7):e1007970. doi: 10.1371/journal.pcbi.1007970. eCollection 2020 Jul. PLoS Comput Biol. 2020. PMID: 32639954 Free PMC article.
Assessment of protein assembly prediction in CASP13.
Guzenko D, Lafita A, Monastyrskyy B, Kryshtafovych A, Duarte JM. Guzenko D, et al. Proteins. 2019 Dec;87(12):1190-1199. doi: 10.1002/prot.25795. Epub 2019 Aug 27. Proteins. 2019. PMID: 31374138 Free PMC article.
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.
Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, Christie C, Dalenberg K, Duarte JM, Dutta S, Feng Z, Ghosh S, Goodsell DS, Green RK, Guranovic V, Guzenko D, Hudson BP, Kalro T, Liang Y, Lowe R, Namkoong H, Peisach E, Periskova I, Prlic A, Randle C, Rose A, Rose P, Sala R, Sekharan M, Shao C, Tan L, Tao YP, Valasatava Y, Voigt M, Westbrook J, Woo J, Yang H, Young J, Zhuravleva M, Zardecki C. Burley SK, et al. Among authors: guzenko d. Nucleic Acids Res. 2019 Jan 8;47(D1):D464-D474. doi: 10.1093/nar/gky1004. Nucleic Acids Res. 2019. PMID: 30357411 Free PMC article.
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Christie CH, Dalenberg K, Di Costanzo L, Duarte JM, Dutta S, Feng Z, Ganesan S, Goodsell DS, Ghosh S, Green RK, Guranović V, Guzenko D, Hudson BP, Lawson CL, Liang Y, Lowe R, Namkoong H, Peisach E, Persikova I, Randle C, Rose A, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Tao YP, Voigt M, Westbrook JD, Young JY, Zardecki C, Zhuravleva M. Burley SK, et al. Among authors: guzenko d. Nucleic Acids Res. 2021 Jan 8;49(D1):D437-D451. doi: 10.1093/nar/gkaa1038. Nucleic Acids Res. 2021. PMID: 33211854 Free PMC article.
Granular clustering of de novo protein models.
Guzenko D, Strelkov SV. Guzenko D, et al. Bioinformatics. 2017 Feb 1;33(3):390-396. doi: 10.1093/bioinformatics/btw628. Bioinformatics. 2017. PMID: 28171609
Intermediate filament structure: the bottom-up approach.
Chernyatina AA, Guzenko D, Strelkov SV. Chernyatina AA, et al. Among authors: guzenko d. Curr Opin Cell Biol. 2015 Feb;32:65-72. doi: 10.1016/j.ceb.2014.12.007. Epub 2015 Jan 14. Curr Opin Cell Biol. 2015. PMID: 25596497 Review.
17 results