Gumulya Y - Search Results

1

In a quest for engineering acidophiles for biomining applications: challenges and opportunities.

Gumulya Y, Boxall NJ, Khaleque HN, Santala V, Carlson RP, Kaksonen AH. Gumulya Y, et al. Genes (Basel). 2018 Feb 21;9(2):116. doi: 10.3390/genes9020116. Genes (Basel). 2018. PMID: 29466321 Free PMC article. Review.

2

Potential of Acidithiobacillus ferrooxidans to Grow on and Bioleach Metals from Mars and Lunar Regolith Simulants under Simulated Microgravity Conditions.

Kaksonen AH, Deng X, Morris C, Khaleque HN, Zea L, Gumulya Y. Kaksonen AH, et al. Among authors: gumulya y. Microorganisms. 2021 Nov 23;9(12):2416. doi: 10.3390/microorganisms9122416. Microorganisms. 2021. PMID: 34946018 Free PMC article.

3

Genetically programmed chiral organoborane synthesis.

Kan SBJ, Huang X, Gumulya Y, Chen K, Arnold FH. Kan SBJ, et al. Among authors: gumulya y. Nature. 2017 Dec 7;552(7683):132-136. doi: 10.1038/nature24996. Epub 2017 Nov 29. Nature. 2017. PMID: 29186119 Free PMC article.

4

Exploring the past and the future of protein evolution with ancestral sequence reconstruction: the 'retro' approach to protein engineering.

Gumulya Y, Gillam EM. Gumulya Y, et al. Biochem J. 2017 Jan 1;474(1):1-19. doi: 10.1042/BCJ20160507. Biochem J. 2017. PMID: 28008088 Review.

5

Ancestral sequence reconstruction of the CYP711 family reveals functional divergence in strigolactone biosynthetic enzymes associated with gene duplication events in monocot grasses.

Vinde MH, Cao D, Chesterfield RJ, Yoneyama K, Gumulya Y, Thomson RES, Matila T, Ebert BE, Beveridge CA, Vickers CE, Gillam EMJ. Vinde MH, et al. Among authors: gumulya y. New Phytol. 2022 Sep;235(5):1900-1912. doi: 10.1111/nph.18285. Epub 2022 Jun 25. New Phytol. 2022. PMID: 35644901 Free PMC article.

6

Computational tools for directed evolution: a comparison of prospective and retrospective strategies.

Zaugg J, Gumulya Y, Gillam EM, Bodén M. Zaugg J, et al. Among authors: gumulya y. Methods Mol Biol. 2014;1179:315-33. doi: 10.1007/978-1-4939-1053-3_21. Methods Mol Biol. 2014. PMID: 25055787 Review.

7

Determinants of thermostability in the cytochrome P450 fold.

Harris KL, Thomson RES, Strohmaier SJ, Gumulya Y, Gillam EMJ. Harris KL, et al. Among authors: gumulya y. Biochim Biophys Acta Proteins Proteom. 2018 Jan;1866(1):97-115. doi: 10.1016/j.bbapap.2017.08.003. Epub 2017 Aug 17. Biochim Biophys Acta Proteins Proteom. 2018. PMID: 28822812 Review.

8

Ancestral Sequence Reconstruction of a Cytochrome P450 Family Involved in Chemical Defense Reveals the Functional Evolution of a Promiscuous, Xenobiotic-Metabolizing Enzyme in Vertebrates.

Harris KL, Thomson RES, Gumulya Y, Foley G, Carrera-Pacheco SE, Syed P, Janosik T, Sandinge AS, Andersson S, Jurva U, Bodén M, Gillam EMJ. Harris KL, et al. Among authors: gumulya y. Mol Biol Evol. 2022 Jun 2;39(6):msac116. doi: 10.1093/molbev/msac116. Mol Biol Evol. 2022. PMID: 35639613 Free PMC article.

9

Learning epistatic interactions from sequence-activity data to predict enantioselectivity.

Zaugg J, Gumulya Y, Malde AK, Bodén M. Zaugg J, et al. Among authors: gumulya y. J Comput Aided Mol Des. 2017 Dec;31(12):1085-1096. doi: 10.1007/s10822-017-0090-x. Epub 2017 Dec 12. J Comput Aided Mol Des. 2017. PMID: 29234997

10

Effect of Binding on Enantioselectivity of Epoxide Hydrolase.

Zaugg J, Gumulya Y, Bodén M, Mark AE, Malde AK. Zaugg J, et al. Among authors: gumulya y. J Chem Inf Model. 2018 Mar 26;58(3):630-640. doi: 10.1021/acs.jcim.7b00353. Epub 2018 Feb 20. J Chem Inf Model. 2018. PMID: 29424533

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