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Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
Gryganskyi AP, Golan J, Muszewska A, Idnurm A, Dolatabadi S, Mondo SJ, Kutovenko VB, Kutovenko VO, Gajdeczka MT, Anishchenko IM, Pawlowska J, Tran NV, Ebersberger I, Voigt K, Wang Y, Chang Y, Pawlowska TE, Heitman J, Vilgalys R, Bonito G, Benny GL, Smith ME, Reynolds N, James TY, Grigoriev IV, Spatafora JW, Stajich JE. Gryganskyi AP, et al. Microorganisms. 2023 Jul 18;11(7):1830. doi: 10.3390/microorganisms11071830. Microorganisms. 2023. PMID: 37513002 Free PMC article. Review.
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.
Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE. Spatafora JW, et al. Mycologia. 2016 Sep;108(5):1028-1046. doi: 10.3852/16-042. Mycologia. 2016. PMID: 27738200 Free PMC article.
Phylogenetic and Phylogenomic Definition of Rhizopus Species.
Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, de Hoog GS, Smith ME, Heitman J, Vilgalys R, Stajich JE. Gryganskyi AP, et al. G3 (Bethesda). 2018 May 31;8(6):2007-2018. doi: 10.1534/g3.118.200235. G3 (Bethesda). 2018. PMID: 29674435 Free PMC article.
Phylogenetic lineages in Entomophthoromycota.
Gryganskyi AP, Humber RA, Smith ME, Hodge K, Huang B, Voigt K, Vilgalys R. Gryganskyi AP, et al. Persoonia. 2013 Jun;30:94-105. doi: 10.3767/003158513X666330. Epub 2013 Mar 19. Persoonia. 2013. PMID: 24027349 Free PMC article.
Widespread adenine N6-methylation of active genes in fungi.
Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV. Mondo SJ, et al. Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8. Nat Genet. 2017. PMID: 28481340
Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses.
Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, Corrochano LM, Gryganskyi A, Grigoriev IV, James TY. Myers JM, et al. mBio. 2020 Sep 8;11(5):e02027-20. doi: 10.1128/mBio.02027-20. mBio. 2020. PMID: 32900807 Free PMC article.
Molecular phylogeny of the Entomophthoromycota.
Gryganskyi AP, Humber RA, Smith ME, Miadlikowska J, Wu S, Voigt K, Walther G, Anishchenko IM, Vilgalys R. Gryganskyi AP, et al. Mol Phylogenet Evol. 2012 Nov;65(2):682-94. doi: 10.1016/j.ympev.2012.07.026. Epub 2012 Aug 2. Mol Phylogenet Evol. 2012. PMID: 22877646
24 results