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Survey of metaproteomics software tools for functional microbiome analysis.
PLoS One. 2020 Nov 10;15(11):e0241503. doi: 10.1371/journal.pone.0241503. eCollection 2020.
PLoS One. 2020.
PMID: 33170893
Free PMC article.
Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms.
Thuy-Boun PS, Mehta S, Gruening B, McGowan T, Nguyen A, Rajczewski AT, Johnson JE, Griffin TJ, Wolan DW, Jagtap PD.
Thuy-Boun PS, et al.
J Proteome Res. 2021 Feb 5;20(2):1451-1454. doi: 10.1021/acs.jproteome.0c00822. Epub 2021 Jan 4.
J Proteome Res. 2021.
PMID: 33393790
Free PMC article.
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Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework.
Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, Rudney J, Tanca A, Griffin TJ, Jagtap PD.
Blank C, et al.
Proteomes. 2018 Jan 31;6(1):7. doi: 10.3390/proteomes6010007.
Proteomes. 2018.
PMID: 29385081
Free PMC article.
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SuperScent--a database of flavors and scents.
Dunkel M, Schmidt U, Struck S, Berger L, Gruening B, Hossbach J, Jaeger IS, Effmert U, Piechulla B, Eriksson R, Knudsen J, Preissner R.
Dunkel M, et al.
Nucleic Acids Res. 2009 Jan;37(Database issue):D291-4. doi: 10.1093/nar/gkn695. Epub 2008 Oct 17.
Nucleic Acids Res. 2009.
PMID: 18931377
Free PMC article.
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SuperToxic: a comprehensive database of toxic compounds.
Schmidt U, Struck S, Gruening B, Hossbach J, Jaeger IS, Parol R, Lindequist U, Teuscher E, Preissner R.
Schmidt U, et al.
Nucleic Acids Res. 2009 Jan;37(Database issue):D295-9. doi: 10.1093/nar/gkn850. Epub 2008 Nov 12.
Nucleic Acids Res. 2009.
PMID: 19004875
Free PMC article.
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Toxicity versus potency: elucidation of toxicity properties discriminating between toxins, drugs, and natural compounds.
Struck S, Schmidt U, Gruening B, Jaeger IS, Hossbach J, Preissner R.
Struck S, et al.
Genome Inform. 2008;20:231-42.
Genome Inform. 2008.
PMID: 19425137
Free article.
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Voronoia: analyzing packing in protein structures.
Rother K, Hildebrand PW, Goede A, Gruening B, Preissner R.
Rother K, et al.
Nucleic Acids Res. 2009 Jan;37(Database issue):D393-5. doi: 10.1093/nar/gkn769. Epub 2008 Oct 23.
Nucleic Acids Res. 2009.
PMID: 18948293
Free PMC article.
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SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins.
Hildebrand PW, Goede A, Bauer RA, Gruening B, Ismer J, Michalsky E, Preissner R.
Hildebrand PW, et al.
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W571-4. doi: 10.1093/nar/gkp338. Epub 2009 May 8.
Nucleic Acids Res. 2009.
PMID: 19429894
Free PMC article.
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