Grudinin S - Search Results

1

Deep convolutional networks for quality assessment of protein folds.

Derevyanko G, Grudinin S, Bengio Y, Lamoureux G. Derevyanko G, et al. Among authors: grudinin s. Bioinformatics. 2018 Dec 1;34(23):4046-4053. doi: 10.1093/bioinformatics/bty494. Bioinformatics. 2018. PMID: 29931128

2

Blind prediction of interfacial water positions in CAPRI.

Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, Fernández-Recio J, Xu J, Muthu P, Praneeth Kilambi K, Gray JJ, Grudinin S, Derevyanko G, Mitchell JC, Wieting J, Kanamori E, Tsuchiya Y, Murakami Y, Sarmiento J, Standley DM, Shirota M, Kinoshita K, Nakamura H, Chavent M, Ritchie DW, Park H, Ko J, Lee H, Seok C, Shen Y, Kozakov D, Vajda S, Kundrotas PJ, Vakser IA, Pierce BG, Hwang H, Vreven T, Weng Z, Buch I, Farkash E, Wolfson HJ, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Wojdyla JA, Kleanthous C, Wodak SJ. Lensink MF, et al. Among authors: grudinin s. Proteins. 2014 Apr;82(4):620-32. doi: 10.1002/prot.24439. Epub 2013 Nov 23. Proteins. 2014. PMID: 24155158 Free PMC article.

3

HermiteFit: fast-fitting atomic structures into a low-resolution density map using three-dimensional orthogonal Hermite functions.

Derevyanko G, Grudinin S. Derevyanko G, et al. Among authors: grudinin s. Acta Crystallogr D Biol Crystallogr. 2014 Aug;70(Pt 8):2069-84. doi: 10.1107/S1399004714011493. Epub 2014 Jul 25. Acta Crystallogr D Biol Crystallogr. 2014. PMID: 25084327

4

PEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation.

Neveu E, Ritchie DW, Popov P, Grudinin S. Neveu E, et al. Among authors: grudinin s. Bioinformatics. 2016 Sep 1;32(17):i693-i701. doi: 10.1093/bioinformatics/btw443. Bioinformatics. 2016. PMID: 27587691

5

RapidRMSD: rapid determination of RMSDs corresponding to motions of flexible molecules.

Neveu E, Popov P, Hoffmann A, Migliosi A, Besseron X, Danoy G, Bouvry P, Grudinin S. Neveu E, et al. Among authors: grudinin s. Bioinformatics. 2018 Aug 15;34(16):2757-2765. doi: 10.1093/bioinformatics/bty160. Bioinformatics. 2018. PMID: 29554205

6

Analytical symmetry detection in protein assemblies. I. Cyclic symmetries.

Pagès G, Kinzina E, Grudinin S. Pagès G, et al. Among authors: grudinin s. J Struct Biol. 2018 Aug;203(2):142-148. doi: 10.1016/j.jsb.2018.04.004. Epub 2018 Apr 27. J Struct Biol. 2018. PMID: 29705493

7

Smooth orientation-dependent scoring function for coarse-grained protein quality assessment.

Karasikov M, Pagès G, Grudinin S. Karasikov M, et al. Among authors: grudinin s. Bioinformatics. 2019 Aug 15;35(16):2801-2808. doi: 10.1093/bioinformatics/bty1037. Bioinformatics. 2019. PMID: 30590384

8

Protein model quality assessment using 3D oriented convolutional neural networks.

Pagès G, Charmettant B, Grudinin S. Pagès G, et al. Among authors: grudinin s. Bioinformatics. 2019 Sep 15;35(18):3313-3319. doi: 10.1093/bioinformatics/btz122. Bioinformatics. 2019. PMID: 30874723

9

DeepSymmetry: using 3D convolutional networks for identification of tandem repeats and internal symmetries in protein structures.

Pagès G, Grudinin S. Pagès G, et al. Among authors: grudinin s. Bioinformatics. 2019 Dec 15;35(24):5113-5120. doi: 10.1093/bioinformatics/btz454. Bioinformatics. 2019. PMID: 31161198

10

Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.

Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A. Fajardo JE, et al. Among authors: grudinin s. Proteins. 2019 Dec;87(12):1283-1297. doi: 10.1002/prot.25816. Epub 2019 Oct 7. Proteins. 2019. PMID: 31569265 Free PMC article.

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