Grudinin S - Search Results

1

Unique DC-SIGN clustering activity of a small glycomimetic: A lesson for ligand design.

Sutkeviciute I, Thépaut M, Sattin S, Berzi A, McGeagh J, Grudinin S, Weiser J, Le Roy A, Reina JJ, Rojo J, Clerici M, Bernardi A, Ebel C, Fieschi F. Sutkeviciute I, et al. Among authors: grudinin s. ACS Chem Biol. 2014 Jun 20;9(6):1377-85. doi: 10.1021/cb500054h. Epub 2014 May 6. ACS Chem Biol. 2014. PMID: 24749535

2

Interdomain Flexibility within NADPH Oxidase Suggested by SANS Using LMNG Stealth Carrier.

Vermot A, Petit-Härtlein I, Breyton C, Le Roy A, Thépaut M, Vivès C, Moulin M, Härtlein M, Grudinin S, Smith SME, Ebel C, Martel A, Fieschi F. Vermot A, et al. Among authors: grudinin s. Biophys J. 2020 Aug 4;119(3):605-618. doi: 10.1016/j.bpj.2020.06.025. Epub 2020 Jul 3. Biophys J. 2020. PMID: 32668232 Free PMC article.

3

Active state of sensory rhodopsin II: structural determinants for signal transfer and proton pumping.

Gushchin I, Reshetnyak A, Borshchevskiy V, Ishchenko A, Round E, Grudinin S, Engelhard M, Büldt G, Gordeliy V. Gushchin I, et al. Among authors: grudinin s. J Mol Biol. 2011 Sep 30;412(4):591-600. doi: 10.1016/j.jmb.2011.07.022. Epub 2011 Aug 4. J Mol Biol. 2011. PMID: 21840321 Free article.

4

Knowledge of Native Protein-Protein Interfaces Is Sufficient To Construct Predictive Models for the Selection of Binding Candidates.

Popov P, Grudinin S. Popov P, et al. Among authors: grudinin s. J Chem Inf Model. 2015 Oct 26;55(10):2242-55. doi: 10.1021/acs.jcim.5b00372. Epub 2015 Sep 23. J Chem Inf Model. 2015. PMID: 26353078

5

Analytical symmetry detection in protein assemblies. II. Dihedral and cubic symmetries.

Pagès G, Grudinin S. Pagès G, et al. Among authors: grudinin s. J Struct Biol. 2018 Sep;203(3):185-194. doi: 10.1016/j.jsb.2018.05.005. Epub 2018 Jun 15. J Struct Biol. 2018. PMID: 29902523

6

Predicting binding poses and affinities for protein - ligand complexes in the 2015 D3R Grand Challenge using a physical model with a statistical parameter estimation.

Grudinin S, Kadukova M, Eisenbarth A, Marillet S, Cazals F. Grudinin S, et al. J Comput Aided Mol Des. 2016 Sep;30(9):791-804. doi: 10.1007/s10822-016-9976-2. Epub 2016 Oct 7. J Comput Aided Mol Des. 2016. PMID: 27718029

7

Docking of small molecules to farnesoid X receptors using AutoDock Vina with the Convex-PL potential: lessons learned from D3R Grand Challenge 2.

Kadukova M, Grudinin S. Kadukova M, et al. Among authors: grudinin s. J Comput Aided Mol Des. 2018 Jan;32(1):151-162. doi: 10.1007/s10822-017-0062-1. Epub 2017 Sep 14. J Comput Aided Mol Des. 2018. PMID: 28913782

8

Analytical symmetry detection in protein assemblies. I. Cyclic symmetries.

Pagès G, Kinzina E, Grudinin S. Pagès G, et al. Among authors: grudinin s. J Struct Biol. 2018 Aug;203(2):142-148. doi: 10.1016/j.jsb.2018.04.004. Epub 2018 Apr 27. J Struct Biol. 2018. PMID: 29705493

9

Predicting Protein Functional Motions: an Old Recipe with a New Twist.

Grudinin S, Laine E, Hoffmann A. Grudinin S, et al. Biophys J. 2020 May 19;118(10):2513-2525. doi: 10.1016/j.bpj.2020.03.020. Epub 2020 Apr 4. Biophys J. 2020. PMID: 32330413 Free PMC article.

10

HOPMA: Boosting Protein Functional Dynamics with Colored Contact Maps.

Laine E, Grudinin S. Laine E, et al. Among authors: grudinin s. J Phys Chem B. 2021 Mar 18;125(10):2577-2588. doi: 10.1021/acs.jpcb.0c11633. Epub 2021 Mar 9. J Phys Chem B. 2021. PMID: 33687221

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