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Structural variants in 3000 rice genomes.
Fuentes RR, Chebotarov D, Duitama J, Smith S, De la Hoz JF, Mohiyuddin M, Wing RA, McNally KL, Tatarinova T, Grigoriev A, Mauleon R, Alexandrov N. Fuentes RR, et al. Among authors: grigoriev a. Genome Res. 2019 May;29(5):870-880. doi: 10.1101/gr.241240.118. Epub 2019 Apr 16. Genome Res. 2019. PMID: 30992303 Free PMC article.
GROM-RD: resolving genomic biases to improve read depth detection of copy number variants.
Smith SD, Kawash JK, Grigoriev A. Smith SD, et al. Among authors: grigoriev a. PeerJ. 2015 Mar 17;3:e836. doi: 10.7717/peerj.836. eCollection 2015. PeerJ. 2015. PMID: 25802807 Free PMC article.
We found non-uniform variance across distinct GC regions after using existing GC bias correction methods and developed a novel approach to normalize such variance. Although complex and repetitive genome segments complicate CNV detection, GROM-RD adjusts for repeat bias and …
We found non-uniform variance across distinct GC regions after using existing GC bias correction methods and developed a novel approa …
Lightning-fast genome variant detection with GROM.
Smith SD, Kawash JK, Grigoriev A. Smith SD, et al. Among authors: grigoriev a. Gigascience. 2017 Oct 1;6(10):1-7. doi: 10.1093/gigascience/gix091. Gigascience. 2017. PMID: 29048532 Free PMC article.
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.
Lee AY, Ewing AD, Ellrott K, Hu Y, Houlahan KE, Bare JC, Espiritu SMG, Huang V, Dang K, Chong Z, Caloian C, Yamaguchi TN; ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants; Kellen MR, Chen K, Norman TC, Friend SH, Guinney J, Stolovitzky G, Haussler D, Margolin AA, Stuart JM, Boutros PC. Lee AY, et al. Genome Biol. 2018 Nov 6;19(1):188. doi: 10.1186/s13059-018-1539-5. Genome Biol. 2018. PMID: 30400818 Free PMC article.
Inferring targeting modes of Argonaute-loaded tRNA fragments.
Guan L, Karaiskos S, Grigoriev A. Guan L, et al. Among authors: grigoriev a. RNA Biol. 2020 Aug;17(8):1070-1080. doi: 10.1080/15476286.2019.1676633. Epub 2019 Oct 15. RNA Biol. 2020. PMID: 31613177 Free PMC article.
An integrated YAC map of the human X chromosome.
Roest Crollius H, Ross MT, Grigoriev A, Knights CJ, Holloway E, Misfud J, Li K, Playford M, Gregory SG, Humphray SJ, Coffey AJ, See CG, Marsh S, Vatcheva R, Kumlien J, Labella T, Lam V, Rak KH, Todd K, Mott R, Graeser D, Rappold G, Zehetner G, Poustka A, Bentley DR, Monaco AP, Lehrach H. Roest Crollius H, et al. Among authors: grigoriev a. Genome Res. 1996 Oct;6(10):943-55. doi: 10.1101/gr.6.10.943. Genome Res. 1996. PMID: 8908513 Free article.
236 results