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Page 1
Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples.
de Vries JJC, Brown JR, Fischer N, Sidorov IA, Morfopoulou S, Huang J, Munnink BBO, Sayiner A, Bulgurcu A, Rodriguez C, Gricourt G, Keyaerts E, Beller L, Bachofen C, Kubacki J, Samuel C, Florian L, Dennis S, Beer M, Hoeper D, Huber M, Kufner V, Zaheri M, Lebrand A, Papa A, van Boheemen S, Kroes ACM, Breuer J, Lopez-Labrador FX, Claas ECJ. de Vries JJC, et al. Among authors: gricourt g. J Clin Virol. 2021 Aug;141:104908. doi: 10.1016/j.jcv.2021.104908. Epub 2021 Jul 8. J Clin Virol. 2021. PMID: 34273858 Free PMC article.
Fitness-associated substitutions following failure of direct-acting antivirals assessed by deep sequencing of full-length hepatitis C virus genomes.
Fourati S, Rodriguez C, Soulier A, Donati F, Hamadat S, Poiteau L, Demontant V, Brillet R, Ahnou N, Gricourt G, Chevaliez S, Ahmed-Belkacem A, Pawlotsky JM. Fourati S, et al. Among authors: gricourt g. Aliment Pharmacol Ther. 2020 Nov;52(10):1583-1591. doi: 10.1111/apt.16054. Epub 2020 Sep 4. Aliment Pharmacol Ther. 2020. PMID: 32886807
Viral genomic, metagenomic and human transcriptomic characterization and prediction of the clinical forms of COVID-19.
Rodriguez C, de Prost N, Fourati S, Lamoureux C, Gricourt G, N'debi M, Canoui-Poitrine F, Désveaux I, Picard O, Demontant V, Trawinski E, Lepeule R, Surgers L, Vindrios W, Lelièvre JD, Mongardon N, Langeron O, Cohen JL, Mekontso-Dessap A, Woerther PL, Pawlotsky JM. Rodriguez C, et al. Among authors: gricourt g. PLoS Pathog. 2021 Mar 29;17(3):e1009416. doi: 10.1371/journal.ppat.1009416. eCollection 2021 Mar. PLoS Pathog. 2021. PMID: 33780519 Free PMC article. Clinical Trial.
Fatal Encephalitis Caused by Cristoli Virus, an Emerging Orthobunyavirus, France.
Rodriguez C, Gricourt G, Ndebi M, Demontant V, Poiteau L, Burrel S, Boutolleau D, Woerther PL, Calvez V, Stroer S, Pawlotsky JM. Rodriguez C, et al. Among authors: gricourt g. Emerg Infect Dis. 2020 Jun;26(6):1287-1290. doi: 10.3201/eid2606.191431. Emerg Infect Dis. 2020. PMID: 32441621 Free PMC article.
16S metagenomic assessment of the skin microbiota dynamic and possible association with the risk of infection in patients with epidermal necrolysis.
Lavaud J, Hüssler S, Gricourt G, de Prost N, Rodriguez C, Ingen-Housz-Oro S, Chosidow O, Bernigaud C, Woerther PL. Lavaud J, et al. Among authors: gricourt g. J Eur Acad Dermatol Venereol. 2021 Dec;35(12):e914-e917. doi: 10.1111/jdv.17584. Epub 2021 Aug 18. J Eur Acad Dermatol Venereol. 2021. PMID: 34365683 No abstract available.
Pathogen identification by shotgun metagenomics of patients with necrotizing soft-tissue infections.
Rodriguez C, Jary A, Hua C, Woerther PL, Bosc R, Desroches M, Sitterlé E, Gricourt G, De Prost N, Pawlotsky JM, Chosidow O, Sbidian E, Decousser JW; Multidisciplinary Necrotizing Fasciitis Study Group. Rodriguez C, et al. Among authors: gricourt g. Br J Dermatol. 2020 Jul;183(1):105-113. doi: 10.1111/bjd.18611. Epub 2019 Dec 2. Br J Dermatol. 2020. PMID: 31610037
Case Report: Cerebral Nocardiosis Caused by Nocardia cyriacigeorgica Detected by Metagenomics in an Apparently Immunocompetent Patient.
Courbin V, Riller Q, Amegnizin JL, Gricourt G, Demontant V, Fihman V, Angebault C, Mahevas M, Gaube G, Coutte L, Pawlotsky JM, Lepeule R, Rodriguez C, Woerther PL. Courbin V, et al. Among authors: gricourt g. Front Immunol. 2022 Feb 3;13:719124. doi: 10.3389/fimmu.2022.719124. eCollection 2022. Front Immunol. 2022. PMID: 35185867 Free PMC article.
Macrophage autophagy protects against hepatocellular carcinogenesis in mice.
Deust A, Chobert MN, Demontant V, Gricourt G, Denaës T, Thiolat A, Ruiz I, Rodriguez C, Pawlotsky JM, Teixeira-Clerc F. Deust A, et al. Among authors: gricourt g. Sci Rep. 2021 Sep 22;11(1):18809. doi: 10.1038/s41598-021-98203-5. Sci Rep. 2021. PMID: 34552122 Free PMC article.
Prospective Comparison Between Shotgun Metagenomics and Sanger Sequencing of the 16S rRNA Gene for the Etiological Diagnosis of Infections.
Lamoureux C, Surgers L, Fihman V, Gricourt G, Demontant V, Trawinski E, N'Debi M, Gomart C, Royer G, Launay N, Le Glaunec JM, Wemmert C, La Martire G, Rossi G, Lepeule R, Pawlotsky JM, Rodriguez C, Woerther PL. Lamoureux C, et al. Among authors: gricourt g. Front Microbiol. 2022 Apr 6;13:761873. doi: 10.3389/fmicb.2022.761873. eCollection 2022. Front Microbiol. 2022. PMID: 35464955 Free PMC article.
Fatal encephalitis caused by Newcastle disease virus in a child.
Winter S, Lechapt E, Gricourt G, N'debi M, Boddaert N, Moshous D, Blauwblomme T, Kossorotoff M, Fouyssac F, Chareyre J, Demontant V, Chretien F, Woerther PL, Pawlotsky JM, Blanche S, Neven B, Rodriguez C. Winter S, et al. Among authors: gricourt g. Acta Neuropathol. 2021 Sep;142(3):605-608. doi: 10.1007/s00401-021-02344-w. Epub 2021 Jul 25. Acta Neuropathol. 2021. PMID: 34304282 No abstract available.
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