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Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination.
Bolze A, Basler T, White S, Dei Rossi A, Wyman D, Dai H, Roychoudhury P, Greninger AL, Hayashibara K, Beatty M, Shah S, Stous S, McCrone JT, Kil E, Cassens T, Tsan K, Nguyen J, Ramirez J, Carter S, Cirulli ET, Schiabor Barrett K, Washington NL, Belda-Ferre P, Jacobs S, Sandoval E, Becker D, Lu JT, Isaksson M, Lee W, Luo S. Bolze A, et al. Among authors: greninger al. Med. 2022 Dec 9;3(12):848-859.e4. doi: 10.1016/j.medj.2022.10.002. Epub 2022 Oct 20. Med. 2022. PMID: 36332633 Free PMC article.
Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike.
Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Melchers JM, van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs JM, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM. Yu X, et al. PLoS Pathog. 2023 May 1;19(5):e1011308. doi: 10.1371/journal.ppat.1011308. eCollection 2023 May. PLoS Pathog. 2023. PMID: 37126534 Free PMC article.
Sensitivity of rapid antigen tests against SARS-CoV-2 Omicron and Delta variants.
Rao A, Westbrook A, Bassit L, Parsons R, Fitts E, Greenleaf M, McLendon K, Sullivan JA, O'Sick W, Baugh T, Bowers HB, Frank F, Wang E, Le M, Frediani J, Roychoudhury P, Greninger AL, Jerris R, Pollock NR, Ortlund EA, Roback JD, Lam WA, Piantadosi A. Rao A, et al. Among authors: greninger al. J Clin Microbiol. 2023 Oct 24;61(10):e0013823. doi: 10.1128/jcm.00138-23. Epub 2023 Sep 20. J Clin Microbiol. 2023. PMID: 37728336 Free PMC article.
Outcomes associated with SARS-CoV-2 viral clades in COVID-19.
Nakamichi K, Shen JZ, Lee CS, Lee AY, Roberts EA, Simonson PD, Roychoudhury P, Andriesen JG, Randhawa AK, Mathias PC, Greninger A, Jerome KR, Van Gelder RN. Nakamichi K, et al. medRxiv [Preprint]. 2020 Sep 25:2020.09.24.20201228. doi: 10.1101/2020.09.24.20201228. medRxiv. 2020. PMID: 32995827 Free PMC article. Updated. Preprint.
Associations between SARS-CoV-2 variants and risk of COVID-19 hospitalization among confirmed cases in Washington State: a retrospective cohort study.
Paredes MI, Lunn SM, Famulare M, Frisbie LA, Painter I, Burstein R, Roychoudhury P, Xie H, Mohamed Bakhash SA, Perez R, Lukes M, Ellis S, Sathees S, Mathias PC, Greninger A, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, McDermot E, Truong M, Nickerson DA, Bates DL, Hartman ME, Haugen E, Nguyen TN, Richards JD, Rodriguez JL, Stamatoyannopoulos JA, Thorland E, Melly G, Dykema PE, MacKellar DC, Gray HK, Singh A, Peterson JM, Russell D, Torres LM, Lindquist S, Bedford T, Allen KJ, Oltean HN. Paredes MI, et al. medRxiv [Preprint]. 2022 Feb 16:2021.09.29.21264272. doi: 10.1101/2021.09.29.21264272. medRxiv. 2022. PMID: 34729567 Free PMC article. Updated. Preprint.
Sentinel Surveillance System Implementation and Evaluation for SARS-CoV-2 Genomic Data, Washington, USA, 2020-2021.
Oltean HN, Allen KJ, Frisbie L, Lunn SM, Torres LM, Manahan L, Painter I, Russell D, Singh A, Peterson JM, Grant K, Peter C, Cao R, Garcia K, Mackellar D, Jones L, Halstead H, Gray H, Melly G, Nickerson D, Starita L, Frazar C, Greninger AL, Roychoudhury P, Mathias PC, Kalnoski MH, Ting CN, Lykken M, Rice T, Gonzalez-Robles D, Bina D, Johnson K, Wiley CL, Magnuson SC, Parsons CM, Chapman ED, Valencia CA, Fortna RR, Wolgamot G, Hughes JP, Baseman JG, Bedford T, Lindquist S. Oltean HN, et al. Among authors: greninger al. Emerg Infect Dis. 2023 Feb;29(2):242-251. doi: 10.3201/eid2902.221482. Epub 2023 Jan 3. Emerg Infect Dis. 2023. PMID: 36596565 Free PMC article. Review.
Genomic Analysis of Early Monkeypox Virus Outbreak Strains, Washington, USA.
Roychoudhury P, Sereewit J, Xie H, Nunley E, Bakhash SM, Lieberman NAP, Greninger AL. Roychoudhury P, et al. Among authors: greninger al. Emerg Infect Dis. 2023 Mar;29(3):644-646. doi: 10.3201/eid2903.221446. Epub 2023 Feb 2. Emerg Infect Dis. 2023. PMID: 36732066 Free PMC article.
341 results