Greer S - Search Results

1

The Gastric Cancer Registry: A Genomic Translational Resource for Multidisciplinary Research in Gastric Cancer.

Almeda AF, Grimes SM, Lee H, Greer S, Shin G, McNamara M, Hooker AC, Arce MM, Kubit M, Schauer MC, Van Hummelen P, Ma C, Mills MA, Huang RJ, Hwang JH, Amieva MR, Han SS, Ford JM, Ji HP. Almeda AF, et al. Among authors: greer s. Cancer Epidemiol Biomarkers Prev. 2022 Sep 2;31(9):1693-1700. doi: 10.1158/1055-9965.EPI-22-0308. Cancer Epidemiol Biomarkers Prev. 2022. PMID: 35771165 Free PMC article.

2

Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases.

Greer SU, Nadauld LD, Lau BT, Chen J, Wood-Bouwens C, Ford JM, Kuo CJ, Ji HP. Greer SU, et al. Genome Med. 2017 Jun 19;9(1):57. doi: 10.1186/s13073-017-0447-8. Genome Med. 2017. PMID: 28629429 Free PMC article.

3

Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer.

Xia LC, Van Hummelen P, Kubit M, Lee H, Bell JM, Grimes SM, Wood-Bouwens C, Greer SU, Barker T, Haslem DS, Ford JM, Fulde G, Ji HP, Nadauld LD. Xia LC, et al. Among authors: greer su. Sci Rep. 2020 Mar 19;10(1):5009. doi: 10.1038/s41598-020-61643-6. Sci Rep. 2020. PMID: 32193467 Free PMC article.

4

Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8.

Shin G, Greer SU, Hopmans E, Grimes SM, Lee H, Zhao L, Miotke L, Suarez C, Almeda AF, Haraldsdottir S, Ji HP. Shin G, et al. Among authors: greer su. Genome Med. 2021 Sep 6;13(1):145. doi: 10.1186/s13073-021-00958-z. Genome Med. 2021. PMID: 34488871 Free PMC article.

5

Characterization of the consensus mucosal microbiome of colorectal cancer.

Zhao L, Grimes SM, Greer SU, Kubit M, Lee H, Nadauld LD, Ji HP. Zhao L, et al. NAR Cancer. 2021 Dec 22;3(4):zcab049. doi: 10.1093/narcan/zcab049. eCollection 2021 Dec. NAR Cancer. 2021. PMID: 34988460 Free PMC article.

6

KmerKeys: a web resource for searching indexed genome assemblies and variants.

Pavlichin DS, Lee H, Greer SU, Grimes SM, Weissman T, Ji HP. Pavlichin DS, et al. Among authors: greer su. Nucleic Acids Res. 2022 Jul 5;50(W1):W448-W453. doi: 10.1093/nar/gkac266. Nucleic Acids Res. 2022. PMID: 35474383 Free PMC article.

7

Structural variant analysis for linked-read sequencing data with gemtools.

Greer SU, Ji HP. Greer SU, et al. Bioinformatics. 2019 Nov 1;35(21):4397-4399. doi: 10.1093/bioinformatics/btz239. Bioinformatics. 2019. PMID: 30938757 Free PMC article.

8

Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes.

Shin G, Greer SU, Xia LC, Lee H, Zhou J, Boles TC, Ji HP. Shin G, et al. Nucleic Acids Res. 2019 Nov 4;47(19):e115. doi: 10.1093/nar/gkz661. Nucleic Acids Res. 2019. PMID: 31350896 Free PMC article.

9

Single-cell RNA-Seq of follicular lymphoma reveals malignant B-cell types and coexpression of T-cell immune checkpoints.

Andor N, Simonds EF, Czerwinski DK, Chen J, Grimes SM, Wood-Bouwens C, Zheng GXY, Kubit MA, Greer S, Weiss WA, Levy R, Ji HP. Andor N, et al. Among authors: greer s. Blood. 2019 Mar 7;133(10):1119-1129. doi: 10.1182/blood-2018-08-862292. Epub 2018 Dec 27. Blood. 2019. PMID: 30591526 Free PMC article.

10

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.

Zheng GX, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, Kyriazopoulou-Panagiotopoulou S, Masquelier DA, Merrill L, Terry JM, Mudivarti PA, Wyatt PW, Bharadwaj R, Makarewicz AJ, Li Y, Belgrader P, Price AD, Lowe AJ, Marks P, Vurens GM, Hardenbol P, Montesclaros L, Luo M, Greenfield L, Wong A, Birch DE, Short SW, Bjornson KP, Patel P, Hopmans ES, Wood C, Kaur S, Lockwood GK, Stafford D, Delaney JP, Wu I, Ordonez HS, Grimes SM, Greer S, Lee JY, Belhocine K, Giorda KM, Heaton WH, McDermott GP, Bent ZW, Meschi F, Kondov NO, Wilson R, Bernate JA, Gauby S, Kindwall A, Bermejo C, Fehr AN, Chan A, Saxonov S, Ness KD, Hindson BJ, Ji HP. Zheng GX, et al. Among authors: greer s. Nat Biotechnol. 2016 Mar;34(3):303-11. doi: 10.1038/nbt.3432. Epub 2016 Feb 1. Nat Biotechnol. 2016. PMID: 26829319 Free PMC article.

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