Granata D - Search Results

1

Synergistic stabilization of a double mutant in chymotrypsin inhibitor 2 from a library screen in E. coli.

Hamborg L, Granata D, Olsen JG, Roche JV, Pedersen LE, Nielsen AT, Lindorff-Larsen K, Teilum K. Hamborg L, et al. Among authors: granata d. Commun Biol. 2021 Aug 18;4(1):980. doi: 10.1038/s42003-021-02490-7. Commun Biol. 2021. PMID: 34408246 Free PMC article.

2

Conserved conformational dynamics determine enzyme activity.

Torgeson KR, Clarkson MW, Granata D, Lindorff-Larsen K, Page R, Peti W. Torgeson KR, et al. Among authors: granata d. Sci Adv. 2022 Aug 5;8(31):eabo5546. doi: 10.1126/sciadv.abo5546. Epub 2022 Aug 3. Sci Adv. 2022. PMID: 35921420 Free PMC article.

3

Cancer Mutations of the Tumor Suppressor SPOP Disrupt the Formation of Active, Phase-Separated Compartments.

Bouchard JJ, Otero JH, Scott DC, Szulc E, Martin EW, Sabri N, Granata D, Marzahn MR, Lindorff-Larsen K, Salvatella X, Schulman BA, Mittag T. Bouchard JJ, et al. Among authors: granata d. Mol Cell. 2018 Oct 4;72(1):19-36.e8. doi: 10.1016/j.molcel.2018.08.027. Epub 2018 Sep 20. Mol Cell. 2018. PMID: 30244836 Free PMC article.

4

Dynamic activation and regulation of the mitogen-activated protein kinase p38.

Kumar GS, Clarkson MW, Kunze MBA, Granata D, Wand AJ, Lindorff-Larsen K, Page R, Peti W. Kumar GS, et al. Among authors: granata d. Proc Natl Acad Sci U S A. 2018 May 1;115(18):4655-4660. doi: 10.1073/pnas.1721441115. Epub 2018 Apr 16. Proc Natl Acad Sci U S A. 2018. PMID: 29666261 Free PMC article.

5

Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics.

Granata D, Camilloni C, Vendruscolo M, Laio A. Granata D, et al. Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6817-22. doi: 10.1073/pnas.1218350110. Epub 2013 Apr 9. Proc Natl Acad Sci U S A. 2013. PMID: 23572592 Free PMC article.

6

Fluorine-19 NMR and computational quantification of isoflurane binding to the voltage-gated sodium channel NaChBac.

Kinde MN, Bondarenko V, Granata D, Bu W, Grasty KC, Loll PJ, Carnevale V, Klein ML, Eckenhoff RG, Tang P, Xu Y. Kinde MN, et al. Among authors: granata d. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13762-13767. doi: 10.1073/pnas.1609939113. Epub 2016 Nov 15. Proc Natl Acad Sci U S A. 2016. PMID: 27856739 Free PMC article.

7

Patterns of coevolving amino acids unveil structural and dynamical domains.

Granata D, Ponzoni L, Micheletti C, Carnevale V. Granata D, et al. Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):E10612-E10621. doi: 10.1073/pnas.1712021114. Epub 2017 Nov 28. Proc Natl Acad Sci U S A. 2017. PMID: 29183970 Free PMC article.

8

Evolutionarily Conserved Interactions within the Pore Domain of Acid-Sensing Ion Channels.

Kasimova MA, Lynagh T, Sheikh ZP, Granata D, Borg CB, Carnevale V, Pless SA. Kasimova MA, et al. Among authors: granata d. Biophys J. 2020 Feb 25;118(4):861-872. doi: 10.1016/j.bpj.2019.09.001. Epub 2019 Sep 6. Biophys J. 2020. PMID: 31630811 Free PMC article.

9

Free energy surface of an intrinsically disordered protein: comparison between temperature replica exchange molecular dynamics and bias-exchange metadynamics.

Zerze GH, Miller CM, Granata D, Mittal J. Zerze GH, et al. Among authors: granata d. J Chem Theory Comput. 2015 Jun 9;11(6):2776-82. doi: 10.1021/acs.jctc.5b00047. J Chem Theory Comput. 2015. PMID: 26575570

10

The inverted free energy landscape of an intrinsically disordered peptide by simulations and experiments.

Granata D, Baftizadeh F, Habchi J, Galvagnion C, De Simone A, Camilloni C, Laio A, Vendruscolo M. Granata D, et al. Sci Rep. 2015 Oct 26;5:15449. doi: 10.1038/srep15449. Sci Rep. 2015. PMID: 26498066 Free PMC article.

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