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NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.
de Koning W, Miladi M, Hiltemann S, Heikema A, Hays JP, Flemming S, van den Beek M, Mustafa DA, Backofen R, Grüning B, Stubbs AP. de Koning W, et al. Among authors: gruning b. Gigascience. 2020 Oct 17;9(10):giaa105. doi: 10.1093/gigascience/giaa105. Gigascience. 2020. PMID: 33068114 Free PMC article.
Mining and evaluation of molecular relationships in literature.
Senger C, Grüning BA, Erxleben A, Döring K, Patel H, Flemming S, Merfort I, Günther S. Senger C, et al. Bioinformatics. 2012 Mar 1;28(5):709-14. doi: 10.1093/bioinformatics/bts026. Epub 2012 Jan 13. Bioinformatics. 2012. PMID: 22247277
Deciphering the Epigenetic Code of Cardiac Myocyte Transcription.
Preissl S, Schwaderer M, Raulf A, Hesse M, Grüning BA, Köbele C, Backofen R, Fleischmann BK, Hein L, Gilsbach R. Preissl S, et al. Circ Res. 2015 Aug 14;117(5):413-23. doi: 10.1161/CIRCRESAHA.115.306337. Epub 2015 Jun 23. Circ Res. 2015. PMID: 26105955
NCBI BLAST+ integrated into Galaxy.
Cock PJ, Chilton JM, Grüning B, Johnson JE, Soranzo N. Cock PJ, et al. Among authors: gruning b. Gigascience. 2015 Aug 25;4:39. doi: 10.1186/s13742-015-0080-7. eCollection 2015. Gigascience. 2015. PMID: 26336600 Free PMC article.
deepTools2: a next generation web server for deep-sequencing data analysis.
Ramírez F, Ryan DP, Grüning B, Bhardwaj V, Kilpert F, Richter AS, Heyne S, Dündar F, Manke T. Ramírez F, et al. Among authors: gruning b. Nucleic Acids Res. 2016 Jul 8;44(W1):W160-5. doi: 10.1093/nar/gkw257. Epub 2016 Apr 13. Nucleic Acids Res. 2016. PMID: 27079975 Free PMC article.
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. Afgan E, et al. Among authors: gruning b. Nucleic Acids Res. 2016 Jul 8;44(W1):W3-W10. doi: 10.1093/nar/gkw343. Epub 2016 May 2. Nucleic Acids Res. 2016. PMID: 27137889 Free PMC article.
123 results