Goto S - Search Results

1

TogoID: an exploratory ID converter to bridge biological datasets.

Ikeda S, Ono H, Ohta T, Chiba H, Naito Y, Moriya Y, Kawashima S, Yamamoto Y, Okamoto S, Goto S, Katayama T. Ikeda S, et al. Among authors: goto s. Bioinformatics. 2022 Sep 2;38(17):4194-4199. doi: 10.1093/bioinformatics/btac491. Bioinformatics. 2022. PMID: 35801937 Free PMC article.

2

PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list.

Kotera M, Nishimura Y, Nakagawa Z, Muto A, Moriya Y, Okamoto S, Kawashima S, Katayama T, Tokimatsu T, Kanehisa M, Goto S. Kotera M, et al. Among authors: goto s. J Bioinform Comput Biol. 2014 Dec;12(6):1442001. doi: 10.1142/S0219720014420013. J Bioinform Comput Biol. 2014. PMID: 25385078

3

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.

Kotera M, Tabei Y, Yamanishi Y, Muto A, Moriya Y, Tokimatsu T, Goto S. Kotera M, et al. Among authors: goto s. Bioinformatics. 2014 Jun 15;30(12):i165-74. doi: 10.1093/bioinformatics/btu265. Bioinformatics. 2014. PMID: 24931980 Free PMC article.

4

ODB: a database of operons accumulating known operons across multiple genomes.

Okuda S, Katayama T, Kawashima S, Goto S, Kanehisa M. Okuda S, et al. Among authors: goto s. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D358-62. doi: 10.1093/nar/gkj037. Nucleic Acids Res. 2006. PMID: 16381886 Free PMC article.

5

MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes.

Arai W, Taniguchi T, Goto S, Moriya Y, Uehara H, Takemoto K, Ogata H, Takami H. Arai W, et al. Among authors: goto s. Biosci Biotechnol Biochem. 2018 Sep;82(9):1515-1517. doi: 10.1080/09168451.2018.1476122. Epub 2018 May 24. Biosci Biotechnol Biochem. 2018. PMID: 29792119

6

jPOSTrepo: an international standard data repository for proteomes.

Okuda S, Watanabe Y, Moriya Y, Kawano S, Yamamoto T, Matsumoto M, Takami T, Kobayashi D, Araki N, Yoshizawa AC, Tabata T, Sugiyama N, Goto S, Ishihama Y. Okuda S, et al. Among authors: goto s. Nucleic Acids Res. 2017 Jan 4;45(D1):D1107-D1111. doi: 10.1093/nar/gkw1080. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899654 Free PMC article.

7

KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.

Aramaki T, Blanc-Mathieu R, Endo H, Ohkubo K, Kanehisa M, Goto S, Ogata H. Aramaki T, et al. Among authors: goto s. Bioinformatics. 2020 Apr 1;36(7):2251-2252. doi: 10.1093/bioinformatics/btz859. Bioinformatics. 2020. PMID: 31742321 Free PMC article.

8

The jPOST environment: an integrated proteomics data repository and database.

Moriya Y, Kawano S, Okuda S, Watanabe Y, Matsumoto M, Takami T, Kobayashi D, Yamanouchi Y, Araki N, Yoshizawa AC, Tabata T, Iwasaki M, Sugiyama N, Tanaka S, Goto S, Ishihama Y. Moriya Y, et al. Among authors: goto s. Nucleic Acids Res. 2019 Jan 8;47(D1):D1218-D1224. doi: 10.1093/nar/gky899. Nucleic Acids Res. 2019. PMID: 30295851 Free PMC article.

9

EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.

Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S. Masoudi-Nejad A, et al. Among authors: goto s. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W459-62. doi: 10.1093/nar/gkl066. Nucleic Acids Res. 2006. PMID: 16845049 Free PMC article.

10

EGENES: transcriptome-based plant database of genes with metabolic pathway information and expressed sequence tag indices in KEGG.

Masoudi-Nejad A, Goto S, Jauregui R, Ito M, Kawashima S, Moriya Y, Endo TR, Kanehisa M. Masoudi-Nejad A, et al. Among authors: goto s. Plant Physiol. 2007 Jun;144(2):857-66. doi: 10.1104/pp.106.095059. Epub 2007 Apr 27. Plant Physiol. 2007. PMID: 17468225 Free PMC article.

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