Gorodkin J - Search Results

1

RNA-Seq Study on the Longissimus thoracis Muscle of Italian Large White Pigs Fed Extruded Linseed with or without Antioxidants and Polyphenols.

Vegni J, Sun Y, Seemann SE, Zappaterra M, Davoli R, Dall'Olio S, Gorodkin J, Zambonelli P. Vegni J, et al. Among authors: gorodkin j. Animals (Basel). 2023 Mar 28;13(7):1187. doi: 10.3390/ani13071187. Animals (Basel). 2023. PMID: 37048443 Free PMC article.

2

EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues.

Scheibye-Alsing K, Cirera S, Gilchrist MJ, Fredholm M, Gorodkin J. Scheibye-Alsing K, et al. Among authors: gorodkin j. BMC Genomics. 2007 Oct 11;8:367. doi: 10.1186/1471-2164-8-367. BMC Genomics. 2007. PMID: 17931413 Free PMC article.

3

The tedious task of finding homologous noncoding RNA genes.

Menzel P, Gorodkin J, Stadler PF. Menzel P, et al. Among authors: gorodkin j. RNA. 2009 Dec;15(12):2075-82. doi: 10.1261/rna.1556009. Epub 2009 Oct 27. RNA. 2009. PMID: 19861422 Free PMC article.

4

Computational applications of DNA structural scales.

Baldi P, Chauvin Y, Brunak S, Gorodkin J, Pedersen AG. Baldi P, et al. Among authors: gorodkin j. Proc Int Conf Intell Syst Mol Biol. 1998;6:35-42. Proc Int Conf Intell Syst Mol Biol. 1998. PMID: 9783207

5

Finding common sequence and structure motifs in a set of RNA sequences.

Gorodkin J, Heyer LJ, Stormo GD. Gorodkin J, et al. Proc Int Conf Intell Syst Mol Biol. 1997;5:120-3. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322025

6

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C. Panitz F, et al. Among authors: gorodkin j. Bioinformatics. 2007 Jul 1;23(13):i387-91. doi: 10.1093/bioinformatics/btm192. Bioinformatics. 2007. PMID: 17646321

7

A quantitative study of pruning by optimal brain damage.

Gorodkin J, Hansen LK, Krogh A, Svarer C, Winther O. Gorodkin J, et al. Int J Neural Syst. 1993 Jun;4(2):159-69. doi: 10.1142/s0129065793000146. Int J Neural Syst. 1993. PMID: 8044376

8

Using sequence motifs for enhanced neural network prediction of protein distance constraints.

Gorodkin J, Lund O, Andersen CA, Brunak S. Gorodkin J, et al. Proc Int Conf Intell Syst Mol Biol. 1999:95-105. Proc Int Conf Intell Syst Mol Biol. 1999. PMID: 10786291

9

SRPDB (Signal Recognition Particle Database).

Gorodkin J, Knudsen B, Zwieb C, Samuelsson T. Gorodkin J, et al. Nucleic Acids Res. 2001 Jan 1;29(1):169-70. doi: 10.1093/nar/29.1.169. Nucleic Acids Res. 2001. PMID: 11125080 Free PMC article.

10

MatrixPlot: visualizing sequence constraints.

Gorodkin J, Staerfeldt HH, Lund O, Brunak S. Gorodkin J, et al. Bioinformatics. 1999 Sep;15(9):769-70. doi: 10.1093/bioinformatics/15.9.769. Bioinformatics. 1999. PMID: 10498780

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