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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.
Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Hua… See abstract for full author list ➔ Shi L, et al. Among authors: gonzaludo n. Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30. Nat Biotechnol. 2010. PMID: 20676074 Free PMC article.
An efficient genotyper and star-allele caller for pharmacogenomics.
Hari A, Zhou Q, Gonzaludo N, Harting J, Scott SA, Qin X, Scherer S, Sahinalp SC, Numanagić I. Hari A, et al. Among authors: gonzaludo n. Genome Res. 2023 Jan;33(1):61-70. doi: 10.1101/gr.277075.122. Epub 2023 Jan 19. Genome Res. 2023. PMID: 36657977 Free PMC article.
CYP2C8, CYP2C9, and CYP2C19 Characterization Using Next-Generation Sequencing and Haplotype Analysis: A GeT-RM Collaborative Project.
Gaedigk A, Boone EC, Scherer SE, Lee SB, Numanagić I, Sahinalp C, Smith JD, McGee S, Radhakrishnan A, Qin X, Wang WY, Farrow EG, Gonzaludo N, Halpern AL, Nickerson DA, Miller NA, Pratt VM, Kalman LV. Gaedigk A, et al. Among authors: gonzaludo n. J Mol Diagn. 2022 Apr;24(4):337-350. doi: 10.1016/j.jmoldx.2021.12.011. Epub 2022 Feb 5. J Mol Diagn. 2022. PMID: 35134542 Free PMC article.
Cyrius: accurate CYP2D6 genotyping using whole-genome sequencing data.
Chen X, Shen F, Gonzaludo N, Malhotra A, Rogert C, Taft RJ, Bentley DR, Eberle MA. Chen X, et al. Among authors: gonzaludo n. Pharmacogenomics J. 2021 Apr;21(2):251-261. doi: 10.1038/s41397-020-00205-5. Epub 2021 Jan 18. Pharmacogenomics J. 2021. PMID: 33462347 Free PMC article.
16 results