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Ten simple rules for making a vocabulary FAIR.
Cox SJD, Gonzalez-Beltran AN, Magagna B, Marinescu MC. Cox SJD, et al. Among authors: gonzalez beltran an. PLoS Comput Biol. 2021 Jun 16;17(6):e1009041. doi: 10.1371/journal.pcbi.1009041. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34133421 Free PMC article.
Machine actionable metadata models.
Batista D, Gonzalez-Beltran A, Sansone SA, Rocca-Serra P. Batista D, et al. Sci Data. 2022 Sep 30;9(1):592. doi: 10.1038/s41597-022-01707-6. Sci Data. 2022. PMID: 36180441 Free PMC article.
FAIR data pipeline: provenance-driven data management for traceable scientific workflows.
Mitchell SN, Lahiff A, Cummings N, Hollocombe J, Boskamp B, Field R, Reddyhoff D, Zarebski K, Wilson A, Viola B, Burke M, Archibald B, Bessell P, Blackwell R, Boden LA, Brett A, Brett S, Dundas R, Enright J, Gonzalez-Beltran AN, Harris C, Hinder I, David Hughes C, Knight M, Mano V, McMonagle C, Mellor D, Mohr S, Marion G, Matthews L, McKendrick IJ, Mark Pooley C, Porphyre T, Reeves A, Townsend E, Turner R, Walton J, Reeve R. Mitchell SN, et al. Among authors: gonzalez beltran an. Philos Trans A Math Phys Eng Sci. 2022 Oct 3;380(2233):20210300. doi: 10.1098/rsta.2021.0300. Epub 2022 Aug 15. Philos Trans A Math Phys Eng Sci. 2022. PMID: 35965468 Free PMC article.
ISA API: An open platform for interoperable life science experimental metadata.
Johnson D, Batista D, Cochrane K, Davey RP, Etuk A, Gonzalez-Beltran A, Haug K, Izzo M, Larralde M, Lawson TN, Minotto A, Moreno P, Nainala VC, O'Donovan C, Pireddu L, Roger P, Shaw F, Steinbeck C, Weber RJM, Sansone SA, Rocca-Serra P. Johnson D, et al. Gigascience. 2021 Sep 16;10(9):giab060. doi: 10.1093/gigascience/giab060. Gigascience. 2021. PMID: 34528664 Free PMC article.
Community standards for open cell migration data.
Gonzalez-Beltran AN, Masuzzo P, Ampe C, Bakker GJ, Besson S, Eibl RH, Friedl P, Gunzer M, Kittisopikul M, Dévédec SEL, Leo S, Moore J, Paran Y, Prilusky J, Rocca-Serra P, Roudot P, Schuster M, Sergeant G, Strömblad S, Swedlow JR, van Erp M, Van Troys M, Zaritsky A, Sansone SA, Martens L. Gonzalez-Beltran AN, et al. Gigascience. 2020 May 1;9(5):giaa041. doi: 10.1093/gigascience/giaa041. Gigascience. 2020. PMID: 32396199 Free PMC article.
linkedISA: semantic representation of ISA-Tab experimental metadata.
González-Beltrán A, Maguire E, Sansone SA, Rocca-Serra P. González-Beltrán A, et al. BMC Bioinformatics. 2014;15 Suppl 14(Suppl 14):S4. doi: 10.1186/1471-2105-15-S14-S4. Epub 2014 Nov 27. BMC Bioinformatics. 2014. PMID: 25472428 Free PMC article.
The FAIR Guiding Principles for scientific data management and stewardship.
Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJ, Groth P, Goble C, Grethe JS, Heringa J, 't Hoen PA, Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Velterop J, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B. Wilkinson MD, et al. Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18. Sci Data. 2016. PMID: 26978244 Free PMC article.
Semantic concept schema of the linear mixed model of experimental observations.
Ćwiek-Kupczyńska H, Filipiak K, Markiewicz A, Rocca-Serra P, Gonzalez-Beltran AN, Sansone SA, Millet EJ, van Eeuwijk F, Ławrynowicz A, Krajewski P. Ćwiek-Kupczyńska H, et al. Among authors: gonzalez beltran an. Sci Data. 2020 Feb 27;7(1):70. doi: 10.1038/s41597-020-0409-7. Sci Data. 2020. PMID: 32109232 Free PMC article.
DATS, the data tag suite to enable discoverability of datasets.
Sansone SA, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe JS, Xu H, Fore IM, Lyle J, Gururaj AE, Chen X, Kim HE, Zong N, Li Y, Liu R, Ozyurt IB, Ohno-Machado L. Sansone SA, et al. Sci Data. 2017 Jun 6;4:170059. doi: 10.1038/sdata.2017.59. Sci Data. 2017. PMID: 28585923 Free PMC article.
44 results