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A new reference implementation of the PSICQUIC web service.
del-Toro N, Dumousseau M, Orchard S, Jimenez RC, Galeota E, Launay G, Goll J, Breuer K, Ono K, Salwinski L, Hermjakob H. del-Toro N, et al. Among authors: goll j. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W601-6. doi: 10.1093/nar/gkt392. Epub 2013 May 13. Nucleic Acids Res. 2013. PMID: 23671334 Free PMC article.
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium.
Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, Hancock RE, Hannick LI, Jurisica I, Khadake J, Lynn DJ, Mahadevan U, Perfetto L, Raghunath A, Ricard-Blum S, Roechert B, Salwinski L, Stümpflen V, Tyers M, Uetz P, Xenarios I, Hermjakob H. Orchard S, et al. Among authors: goll j. Nat Methods. 2012 Apr;9(4):345-50. doi: 10.1038/nmeth.1931. Nat Methods. 2012. PMID: 22453911 Free PMC article.
PSICQUIC and PSISCORE: accessing and scoring molecular interactions.
Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, Kerssemakers J, Khadake J, Lynn DJ, Michaut M, O'Kelly G, Ono K, Orchard S, Prieto C, Razick S, Rigina O, Salwinski L, Simonovic M, Velankar S, Winter A, Wu G, Bader GD, Cesareni G, Donaldson IM, Eisenberg D, Kleywegt GJ, Overington J, Ricard-Blum S, Tyers M, Albrecht M, Hermjakob H. Aranda B, et al. Among authors: goll j. Nat Methods. 2011 Jun 29;8(7):528-9. doi: 10.1038/nmeth.1637. Nat Methods. 2011. PMID: 21716279 Free PMC article. No abstract available.
The Protein Naming Utility: a rules database for protein nomenclature.
Goll J, Montgomery R, Brinkac LM, Schobel S, Harkins DM, Sebastian Y, Shrivastava S, Durkin S, Sutton G. Goll J, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D336-9. doi: 10.1093/nar/gkp958. Epub 2009 Dec 8. Nucleic Acids Res. 2010. PMID: 20007151 Free PMC article.
MPIDB: the microbial protein interaction database.
Goll J, Rajagopala SV, Shiau SC, Wu H, Lamb BT, Uetz P. Goll J, et al. Bioinformatics. 2008 Aug 1;24(15):1743-4. doi: 10.1093/bioinformatics/btn285. Epub 2008 Jun 13. Bioinformatics. 2008. PMID: 18556668 Free PMC article.
The elusive yeast interactome.
Goll J, Uetz P. Goll J, et al. Genome Biol. 2006;7(6):223. doi: 10.1186/gb-2006-7-6-223. Genome Biol. 2006. PMID: 16938899 Free PMC article. Review.
MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions.
Rajagopala SV, Goll J, Gowda ND, Sunil KC, Titz B, Mukherjee A, Mary SS, Raviswaran N, Poojari CS, Ramachandra S, Shtivelband S, Blazie SM, Hofmann J, Uetz P. Rajagopala SV, et al. Among authors: goll j. Bioinformatics. 2008 Nov 15;24(22):2622-7. doi: 10.1093/bioinformatics/btn481. Epub 2008 Sep 11. Bioinformatics. 2008. PMID: 18786976 Free PMC article.
The protein network of bacterial motility.
Rajagopala SV, Titz B, Goll J, Parrish JR, Wohlbold K, McKevitt MT, Palzkill T, Mori H, Finley RL Jr, Uetz P. Rajagopala SV, et al. Among authors: goll j. Mol Syst Biol. 2007;3:128. doi: 10.1038/msb4100166. Epub 2007 Jul 31. Mol Syst Biol. 2007. PMID: 17667950 Free PMC article.
A framework for human microbiome research.
Human Microbiome Project Consortium. Human Microbiome Project Consortium. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209. Nature. 2012. PMID: 22699610 Free PMC article.
83 results