Ghaffari N - Search Results

1

DNA methylation patterns and gene expression from amygdala tissue of mature Brahman cows exposed to prenatal stress.

Baker EC, Earnhardt AL, Cilkiz KZ, Collins HC, Littlejohn BP, Cardoso RC, Ghaffari N, Long CR, Riggs PK, Randel RD, Welsh TH Jr, Riley DG. Baker EC, et al. Among authors: ghaffari n. Front Genet. 2022 Aug 5;13:949309. doi: 10.3389/fgene.2022.949309. eCollection 2022. Front Genet. 2022. PMID: 35991551 Free PMC article.

2

Inter-Individual Variation in DNA Methylation Patterns across Two Tissues and Leukocytes in Mature Brahman Cattle.

Baker EC, San AE, Cilkiz KZ, Littlejohn BP, Cardoso RC, Ghaffari N, Long CR, Riggs PK, Randel RD, Welsh TH Jr, Riley DG. Baker EC, et al. Among authors: ghaffari n. Biology (Basel). 2023 Feb 5;12(2):252. doi: 10.3390/biology12020252. Biology (Basel). 2023. PMID: 36829529 Free PMC article.

3

Differential Expression of Circadian Clock Genes in the Bovine Neuroendocrine Adrenal System.

Earnhardt-San AL, Baker EC, Riley DG, Ghaffari N, Long CR, Cardoso RC, Randel RD, Welsh TH Jr. Earnhardt-San AL, et al. Among authors: ghaffari n. Genes (Basel). 2023 Nov 15;14(11):2082. doi: 10.3390/genes14112082. Genes (Basel). 2023. PMID: 38003025 Free PMC article.

4

Identification and quantification of coding and long non-coding RNAs in stallion spermatozoa separated by density.

Ing NH, Konganti K, Ghaffari N, Johnson CD, Forrest DW, Love CC, Varner DD. Ing NH, et al. Among authors: ghaffari n. Andrology. 2020 Sep;8(5):1409-1418. doi: 10.1111/andr.12791. Epub 2020 Apr 17. Andrology. 2020. PMID: 32243084 Free article.

5

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens.

Wang Y, Ghaffari N, Johnson CD, Braga-Neto UM, Wang H, Chen R, Zhou H. Wang Y, et al. Among authors: ghaffari n. BMC Bioinformatics. 2011 Oct 18;12 Suppl 10(Suppl 10):S5. doi: 10.1186/1471-2105-12-S10-S5. BMC Bioinformatics. 2011. PMID: 22165852 Free PMC article.

6

Modeling the next generation sequencing sample processing pipeline for the purposes of classification.

Ghaffari N, Yousefi MR, Johnson CD, Ivanov I, Dougherty ER. Ghaffari N, et al. BMC Bioinformatics. 2013 Oct 11;14:307. doi: 10.1186/1471-2105-14-307. BMC Bioinformatics. 2013. PMID: 24118904 Free PMC article.

7

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture.

Ghaffari N, Sanchez-Flores A, Doan R, Garcia-Orozco KD, Chen PL, Ochoa-Leyva A, Lopez-Zavala AA, Carrasco JS, Hong C, Brieba LG, Rudiño-Piñera E, Blood PD, Sawyer JE, Johnson CD, Dindot SV, Sotelo-Mundo RR, Criscitiello MF. Ghaffari N, et al. Sci Rep. 2014 Nov 25;4:7081. doi: 10.1038/srep07081. Sci Rep. 2014. PMID: 25420880 Free PMC article.

8

A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction.

Torres MF, Ghaffari N, Buiate EA, Moore N, Schwartz S, Johnson CD, Vaillancourt LJ. Torres MF, et al. Among authors: ghaffari n. BMC Genomics. 2016 Mar 8;17:202. doi: 10.1186/s12864-016-2546-0. BMC Genomics. 2016. PMID: 26956617 Free PMC article.

9

HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment.

Abante J, Ghaffari N, Johnson CD, Datta A. Abante J, et al. Among authors: ghaffari n. BMC Genomics. 2017 Sep 5;18(1):694. doi: 10.1186/s12864-017-3965-2. BMC Genomics. 2017. PMID: 28874136 Free PMC article.

10

The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901.

Guerrero FD, Bendele KG, Ghaffari N, Guhlin J, Gedye KR, Lawrence KE, Dearden PK, Harrop TWR, Heath ACG, Lun Y, Metz RP, Teel P, Perez de Leon A, Biggs PJ, Pomroy WE, Johnson CD, Blood PD, Bellgard SE, Tompkins DM. Guerrero FD, et al. Among authors: ghaffari n. Data Brief. 2019 Oct 4;27:104602. doi: 10.1016/j.dib.2019.104602. eCollection 2019 Dec. Data Brief. 2019. PMID: 31656838 Free PMC article.

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