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A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables.
Nat Microbiol. 2024 Mar;9(3):595-613. doi: 10.1038/s41564-023-01580-y. Epub 2024 Feb 12.
Nat Microbiol. 2024.
PMID: 38347104
Free PMC article.
Microbial interactions from a new perspective: reinforcement learning reveals new insights into microbiome evolution.
Ghadermazi P, Chan SHJ.
Ghadermazi P, et al.
Bioinformatics. 2024 Jan 2;40(1):btae003. doi: 10.1093/bioinformatics/btae003.
Bioinformatics. 2024.
PMID: 38212999
Free PMC article.
Item in Clipboard
Red Cabbage Juice-Mediated Gut Microbiota Modulation Improves Intestinal Epithelial Homeostasis and Ameliorates Colitis.
Jean Wilson E, Sirpu Natesh N, Ghadermazi P, Pothuraju R, Prajapati DR, Pandey S, Kaifi JT, Dodam JR, Bryan JN, Lorson CL, Watrelot AA, Foster JM, Mansell TJ, Joshua Chan SH, Batra SK, Subbiah J, Rachagani S.
Jean Wilson E, et al. Among authors: ghadermazi p.
Int J Mol Sci. 2023 Dec 30;25(1):539. doi: 10.3390/ijms25010539.
Int J Mol Sci. 2023.
PMID: 38203712
Free PMC article.
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Red cabbage juice-mediated gut microbiota modulation improves intestinal epithelial homeostasis and ameliorates colitis.
Jean Wilson E, Sirpu Natesh N, Ghadermazi P, Pothuraju R, Shanmugam M, Prajapati DR, Pandey S, Kaifi JT, Dodam JR, Bryan J, Lorson CL, Watrelot AA, Foster JM, Mansel TJ, Joshua Chan SH, Batra SK, Subbiah J, Rachagani S.
Jean Wilson E, et al. Among authors: ghadermazi p.
bioRxiv [Preprint]. 2023 Aug 24:2023.08.23.554560. doi: 10.1101/2023.08.23.554560.
bioRxiv. 2023.
PMID: 37662255
Free PMC article.
Updated.
Preprint.
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kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.
Shaffer M, Borton MA, Bolduc B, Faria JP, Flynn RM, Ghadermazi P, Edirisinghe JN, Wood-Charlson EM, Miller CS, Chan SHJ, Sullivan MB, Henry CS, Wrighton KC.
Shaffer M, et al. Among authors: ghadermazi p.
Bioinformatics. 2023 Apr 3;39(4):btad110. doi: 10.1093/bioinformatics/btad110.
Bioinformatics. 2023.
PMID: 36857575
Free PMC article.
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Metabolic Engineering Interventions for Sustainable 2,3-Butanediol Production in Gas-Fermenting Clostridium autoethanogenum.
Ghadermazi P, Re A, Ricci L, Chan SHJ.
Ghadermazi P, et al.
mSystems. 2022 Apr 26;7(2):e0111121. doi: 10.1128/msystems.01111-21. Epub 2022 Mar 24.
mSystems. 2022.
PMID: 35323044
Free PMC article.
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Predicting Microbiome Metabolism and Interactions through Integrating Multidisciplinary Principles.
Schmidt CM, Ghadermazi P, Chan SHJ.
Schmidt CM, et al. Among authors: ghadermazi p.
mSystems. 2021 Oct 26;6(5):e0076821. doi: 10.1128/mSystems.00768-21. Epub 2021 Oct 5.
mSystems. 2021.
PMID: 34609169
Free PMC article.
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