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Single-cell genomics and regulatory networks for 388 human brains.
Emani PS, Liu JJ, Clarke D, Jensen M, Warrell J, Gupta C, Meng R, Lee CY, Xu S, Dursun C, Lou S, Chen Y, Chu Z, Galeev T, Hwang A, Li Y, Ni P, Zhou X; PsychENCODE Consortium; Bakken TE, Bendl J, Bicks L, Chatterjee T, Cheng L, Cheng Y, Dai Y, Duan Z, Flaherty M, Fullard JF, Gancz M, Garrido-Martín D, Gaynor-Gillett S, Grundman J, Hawken N, Henry E, Hoffman GE, Huang A, Jiang Y, Jin T, Jorstad NL, Kawaguchi R, Khullar S, Liu J, Liu J, Liu S, Ma S, Margolis M, Mazariegos S, Moore J, Moran JR, Nguyen E, Phalke N, Pjanic M, Pratt H, Quintero D, Rajagopalan AS, Riesenmy TR, Shedd N, Shi M, Spector M, Terwilliger R, Travaglini KJ, Wamsley B, Wang G, Xia Y, Xiao S, Yang AC, Zheng S, Gandal MJ, Lee D, Lein ES, Roussos P, Sestan N, Weng Z, White KP, Won H, Girgenti MJ, Zhang J, Wang D, Geschwind D, Gerstein M. Emani PS, et al. Among authors: gerstein m. bioRxiv [Preprint]. 2024 Mar 30:2024.03.18.585576. doi: 10.1101/2024.03.18.585576. bioRxiv. 2024. PMID: 38562822 Free PMC article. Preprint.
Cross-ancestry, cell-type-informed atlas of gene, isoform, and splicing regulation in the developing human brain.
Wen C, Margolis M, Dai R, Zhang P, Przytycki PF, Vo DD, Bhattacharya A, Matoba N, Jiao C, Kim M, Tsai E, Hoh C, Aygün N, Walker RL, Chatzinakos C, Clarke D, Pratt H, Consortium P, Peters MA, Gerstein M, Daskalakis NP, Weng Z, Jaffe AE, Kleinman JE, Hyde TM, Weinberger DR, Bray NJ, Sestan N, Geschwind DH, Roeder K, Gusev A, Pasaniuc B, Stein JL, Love MI, Pollard KS, Liu C, Gandal MJ. Wen C, et al. Among authors: gerstein m. medRxiv [Preprint]. 2023 Mar 6:2023.03.03.23286706. doi: 10.1101/2023.03.03.23286706. medRxiv. 2023. PMID: 36945630 Free PMC article. Preprint.
Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap.
Gandal MJ, Haney JR, Parikshak NN, Leppa V, Ramaswami G, Hartl C, Schork AJ, Appadurai V, Buil A, Werge TM, Liu C, White KP; CommonMind Consortium; PsychENCODE Consortium; iPSYCH-BROAD Working Group; Horvath S, Geschwind DH. Gandal MJ, et al. Science. 2018 Feb 9;359(6376):693-697. doi: 10.1126/science.aad6469. Science. 2018. PMID: 29439242 Free PMC article.
Predicting A/B compartments from histone modifications using deep learning.
Zheng S, Thakkar N, Harris HL, Liu S, Zhang M, Gerstein M, Aiden EL, Rowley MJ, Noble WS, Gürsoy G, Singh R. Zheng S, et al. Among authors: gerstein m. iScience. 2024 Mar 27;27(5):109570. doi: 10.1016/j.isci.2024.109570. eCollection 2024 May 17. iScience. 2024. PMID: 38646172 Free PMC article.
Validation of Enhancer Regions in Primary Human Neural Progenitor Cells using Capture STARR-seq.
Gaynor-Gillett SC, Cheng L, Shi M, Liu J, Wang G, Spector M, Flaherty M, Wall M, Hwang A, Gu M, Chen Z, Chen Y, Consortium P, Moran JR, Zhang J, Lee D, Gerstein M, Geschwind D, White KP. Gaynor-Gillett SC, et al. Among authors: gerstein m. bioRxiv [Preprint]. 2024 Mar 18:2024.03.14.585066. doi: 10.1101/2024.03.14.585066. bioRxiv. 2024. PMID: 38562832 Free PMC article. Preprint.
Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues.
Bai Z, Zhang D, Gao Y, Tao B, Bao S, Enninful A, Zhang D, Su G, Tian X, Zhang N, Xiao Y, Liu Y, Gerstein M, Li M, Xing Y, Lu J, Xu ML, Fan R. Bai Z, et al. Among authors: gerstein m. bioRxiv [Preprint]. 2024 Feb 8:2024.02.06.579143. doi: 10.1101/2024.02.06.579143. bioRxiv. 2024. PMID: 38370833 Free PMC article. Preprint.
Binding profiles for 954 Drosophila and C. elegans transcription factors reveal tissue specific regulatory relationships.
Kudron M, Gevirtzman L, Victorsen A, Lear BC, Gao J, Xu J, Samanta S, Frink E, Tran-Pearson A, Huynh C, Vafeados D, Hammonds A, Fisher W, Wall M, Wesseling G, Hernandez V, Lin Z, Kasparian M, White K, Allada R, Gerstein M, Hillier L, Celniker SE, Reinke V, Waterston RH. Kudron M, et al. Among authors: gerstein m. bioRxiv [Preprint]. 2024 Jan 20:2024.01.18.576242. doi: 10.1101/2024.01.18.576242. bioRxiv. 2024. PMID: 38293065 Free PMC article. Preprint.
767 results