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Methods for fighting emerging pathogens.
Alcantara LCJ, Amenga-Etego L, Andersson R, Bhaumik M, Choi YK, Decaluwe H, Geoghegan J, Haagmans BL, López S, Mukhtar MM, Nelwan E, Rahal EA, Sato K, Sklan EH, Fang YSC. Alcantara LCJ, et al. Among authors: geoghegan j. Nat Methods. 2022 Apr;19(4):395-397. doi: 10.1038/s41592-022-01441-2. Nat Methods. 2022. PMID: 35396474 No abstract available.
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
Geoghegan JL, Ren X, Storey M, Hadfield J, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Douglas J, Mendes FK, Sporle A, Baker MG, Murdoch DR, French N, Simpson CR, Welch D, Drummond AJ, Holmes EC, Duchêne S, de Ligt J. Geoghegan JL, et al. Nat Commun. 2020 Dec 11;11(1):6351. doi: 10.1038/s41467-020-20235-8. Nat Commun. 2020. PMID: 33311501 Free PMC article.
Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV).
Lopes AM, Capucci L, Gavier-Widén D, Le Gall-Reculé G, Brocchi E, Barbieri I, Quéméner A, Le Pendu J, Geoghegan JL, Holmes EC, Esteves PJ, Abrantes J. Lopes AM, et al. Among authors: geoghegan jl. Virology. 2014 Nov;468-470:104-112. doi: 10.1016/j.virol.2014.08.002. Epub 2014 Aug 23. Virology. 2014. PMID: 25155199 Free article.
A generic assay for whole-genome amplification and deep sequencing of enterovirus A71.
Tan le V, Tuyen NT, Thanh TT, Ngan TT, Van HM, Sabanathan S, Van TT, Thanh le TM, Nguyet LA, Geoghegan JL, Ong KC, Perera D, Hang VT, Ny NT, Anh NT, Ha do Q, Qui PT, Viet do C, Tuan HM, Wong KT, Holmes EC, Chau NV, Thwaites G, van Doorn HR. Tan le V, et al. J Virol Methods. 2015 Apr;215-216:30-6. doi: 10.1016/j.jviromet.2015.02.011. Epub 2015 Feb 19. J Virol Methods. 2015. PMID: 25704598 Free PMC article.
Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.
Geoghegan JL, Tan le V, Kühnert D, Halpin RA, Lin X, Simenauer A, Akopov A, Das SR, Stockwell TB, Shrivastava S, Ngoc NM, Uyen le TT, Tuyen NT, Thanh TT, Hang VT, Qui PT, Hung NT, Khanh TH, Thinh le Q, Nhan le NT, Van HM, Viet do C, Tuan HM, Viet HL, Hien TT, Chau NV, Thwaites G, Grenfell BT, Stadler T, Wentworth DE, Holmes EC, Van Doorn HR. Geoghegan JL, et al. J Virol. 2015 Sep;89(17):8871-9. doi: 10.1128/JVI.00706-15. Epub 2015 Jun 17. J Virol. 2015. PMID: 26085170 Free PMC article.
379 results