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The COVID-19 Ontology.
Sargsyan A, Kodamullil AT, Baksi S, Darms J, Madan S, Gebel S, Keminer O, Jose GM, Balabin H, DeLong LN, Kohler M, Jacobs M, Hofmann-Apitius M. Sargsyan A, et al. Among authors: gebel s. Bioinformatics. 2021 Apr 5;36(24):5703-5705. doi: 10.1093/bioinformatics/btaa1057. Bioinformatics. 2021. PMID: 33346828 Free PMC article.
Integrative data semantics through a model-enabled data stewardship.
Wegner P, Schaaf S, Uebachs M, Domingo-Fernández D, Salimi Y, Gebel S, Sargsyan A, Birkenbihl C, Springstubbe S, Klockgether T, Fluck J, Hofmann-Apitius M, Kodamullil AT. Wegner P, et al. Among authors: gebel s. Bioinformatics. 2022 Aug 2;38(15):3850-3852. doi: 10.1093/bioinformatics/btac375. Bioinformatics. 2022. PMID: 35652780 Free PMC article.
A hybrid approach unveils drug repurposing candidates targeting an Alzheimer pathophysiology mechanism.
Lage-Rupprecht V, Schultz B, Dick J, Namysl M, Zaliani A, Gebel S, Pless O, Reinshagen J, Ellinger B, Ebeling C, Esser A, Jacobs M, Claussen C, Hofmann-Apitius M. Lage-Rupprecht V, et al. Among authors: gebel s. Patterns (N Y). 2022 Jan 26;3(3):100433. doi: 10.1016/j.patter.2021.100433. eCollection 2022 Mar 11. Patterns (N Y). 2022. PMID: 35510183 Free PMC article.
Community-driven roadmap for integrated disease maps.
Ostaszewski M, Gebel S, Kuperstein I, Mazein A, Zinovyev A, Dogrusoz U, Hasenauer J, Fleming RMT, Le Novère N, Gawron P, Ligon T, Niarakis A, Nickerson D, Weindl D, Balling R, Barillot E, Auffray C, Schneider R. Ostaszewski M, et al. Among authors: gebel s. Brief Bioinform. 2019 Mar 25;20(2):659-670. doi: 10.1093/bib/bby024. Brief Bioinform. 2019. PMID: 29688273 Free PMC article. Review.
MINERVA-a platform for visualization and curation of molecular interaction networks.
Gawron P, Ostaszewski M, Satagopam V, Gebel S, Mazein A, Kuzma M, Zorzan S, McGee F, Otjacques B, Balling R, Schneider R. Gawron P, et al. Among authors: gebel s. NPJ Syst Biol Appl. 2016 Sep 22;2:16020. doi: 10.1038/npjsba.2016.20. eCollection 2016. NPJ Syst Biol Appl. 2016. PMID: 28725475 Free PMC article.
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.
Mazein A, Ostaszewski M, Kuperstein I, Watterson S, Le Novère N, Lefaudeux D, De Meulder B, Pellet J, Balaur I, Saqi M, Nogueira MM, He F, Parton A, Lemonnier N, Gawron P, Gebel S, Hainaut P, Ollert M, Dogrusoz U, Barillot E, Zinovyev A, Schneider R, Balling R, Auffray C. Mazein A, et al. Among authors: gebel s. NPJ Syst Biol Appl. 2018 Jun 2;4:21. doi: 10.1038/s41540-018-0059-y. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 29872544 Free PMC article.
45 results