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Testing for Phylogenetic Signal in Single-Cell RNA-Seq Data.
Moravec JC, Lanfear R, Spector DL, Diermeier SD, Gavryushkin A. Moravec JC, et al. Among authors: gavryushkin a. J Comput Biol. 2023 Apr;30(4):518-537. doi: 10.1089/cmb.2022.0357. Epub 2022 Dec 6. J Comput Biol. 2023. PMID: 36475926 Free PMC article.
Tuberous sclerosis complex: a complex case.
Powell RM, Pattison S, Moravec JC, Bhat B, Guirguis N, Markie D, Jones GT, Copedo J, Print CG, Morison IM, Gavryushkin A, Gray B, Wyeth LJ, Eccles MR, Macaulay EC. Powell RM, et al. Among authors: gavryushkin a. Cold Spring Harb Mol Case Stud. 2022 Apr 28;8(3):a006182. doi: 10.1101/mcs.a006182. Print 2022 Apr. Cold Spring Harb Mol Case Stud. 2022. PMID: 35483879 Free PMC article.
A fast lasso-based method for inferring higher-order interactions.
Elmes K, Heywood A, Huang Z, Gavryushkin A. Elmes K, et al. Among authors: gavryushkin a. PLoS Comput Biol. 2022 Dec 29;18(12):e1010730. doi: 10.1371/journal.pcbi.1010730. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36580499 Free PMC article.
Discrete coalescent trees.
Collienne L, Elmes K, Fischer M, Bryant D, Gavryushkin A. Collienne L, et al. Among authors: gavryushkin a. J Math Biol. 2021 Nov 5;83(5):60. doi: 10.1007/s00285-021-01685-0. J Math Biol. 2021. PMID: 34739608 Free PMC article.
Ranked Subtree Prune and Regraft.
Collienne L, Whidden C, Gavryushkin A. Collienne L, et al. Among authors: gavryushkin a. Bull Math Biol. 2024 Jan 31;86(3):24. doi: 10.1007/s11538-023-01244-2. Bull Math Biol. 2024. PMID: 38294587 Free PMC article.
The space of ultrametric phylogenetic trees.
Gavryushkin A, Drummond AJ. Gavryushkin A, et al. J Theor Biol. 2016 Aug 21;403:197-208. doi: 10.1016/j.jtbi.2016.05.001. Epub 2016 May 14. J Theor Biol. 2016. PMID: 27188249 Free article.
18 results