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Learning epistatic gene interactions from perturbation screens.
Elmes K, Schmich F, Szczurek E, Jenkins J, Beerenwinkel N, Gavryushkin A. Elmes K, et al. Among authors: gavryushkin a. PLoS One. 2021 Jul 13;16(7):e0254491. doi: 10.1371/journal.pone.0254491. eCollection 2021. PLoS One. 2021. PMID: 34255784 Free PMC article.
Discrete coalescent trees.
Collienne L, Elmes K, Fischer M, Bryant D, Gavryushkin A. Collienne L, et al. Among authors: gavryushkin a. J Math Biol. 2021 Nov 5;83(5):60. doi: 10.1007/s00285-021-01685-0. J Math Biol. 2021. PMID: 34739608 Free PMC article.
A fast lasso-based method for inferring higher-order interactions.
Elmes K, Heywood A, Huang Z, Gavryushkin A. Elmes K, et al. Among authors: gavryushkin a. PLoS Comput Biol. 2022 Dec 29;18(12):e1010730. doi: 10.1371/journal.pcbi.1010730. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36580499 Free PMC article.
Testing for Phylogenetic Signal in Single-Cell RNA-Seq Data.
Moravec JC, Lanfear R, Spector DL, Diermeier SD, Gavryushkin A. Moravec JC, et al. Among authors: gavryushkin a. J Comput Biol. 2023 Apr;30(4):518-537. doi: 10.1089/cmb.2022.0357. Epub 2022 Dec 6. J Comput Biol. 2023. PMID: 36475926 Free PMC article.
The space of ultrametric phylogenetic trees.
Gavryushkin A, Drummond AJ. Gavryushkin A, et al. J Theor Biol. 2016 Aug 21;403:197-208. doi: 10.1016/j.jtbi.2016.05.001. Epub 2016 May 14. J Theor Biol. 2016. PMID: 27188249 Free article.
18 results