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Longitudinal multi-omics analysis identifies early blood-based predictors of anti-TNF therapy response in inflammatory bowel disease.
Mishra N, Aden K, Blase JI, Baran N, Bordoni D, Tran F, Conrad C, Avalos D, Jaeckel C, Scherer M, Sørensen SB, Overgaard SH, Schulte B, Nikolaus S, Rey G, Gasparoni G, Lyons PA, Schultze JL, Walter J, Andersen V; SYSCID Consortium; Dermitzakis ET, Schreiber S, Rosenstiel P. Mishra N, et al. Among authors: gasparoni g. Genome Med. 2022 Sep 24;14(1):110. doi: 10.1186/s13073-022-01112-z. Genome Med. 2022. PMID: 36153599 Free PMC article.
A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains.
Salhab A, Nordström K, Gasparoni G, Kattler K, Ebert P, Ramirez F, Arrigoni L, Müller F, Polansky JK, Cadenas C, G Hengstler J, Lengauer T, Manke T; DEEP Consortium; Walter J. Salhab A, et al. Among authors: gasparoni g, g hengstler j. Genome Biol. 2018 Sep 28;19(1):150. doi: 10.1186/s13059-018-1510-5. Genome Biol. 2018. PMID: 30266094 Free PMC article.
Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters.
Behjati Ardakani F, Kattler K, Nordström K, Gasparoni N, Gasparoni G, Fuchs S, Sinha A, Barann M, Ebert P, Fischer J, Hutter B, Zipprich G, Imbusch CD, Felder B, Eils J, Brors B, Lengauer T, Manke T, Rosenstiel P, Walter J, Schulz MH. Behjati Ardakani F, et al. Among authors: gasparoni g, gasparoni n. Epigenetics Chromatin. 2018 Nov 10;11(1):66. doi: 10.1186/s13072-018-0236-7. Epigenetics Chromatin. 2018. PMID: 30414612 Free PMC article.
A cell-of-origin epigenetic tracer reveals clinically distinct subtypes of high-grade serous ovarian cancer.
Lo Riso P, Villa CE, Gasparoni G, Vingiani A, Luongo R, Manfredi A, Jungmann A, Bertolotti A, Borgo F, Garbi A, Lupia M, Laise P, Das V, Pruneri G, Viale G, Colombo N, Manzo T, Nezi L, Cavallaro U, Cacchiarelli D, Walter J, Testa G. Lo Riso P, et al. Among authors: gasparoni g. Genome Med. 2020 Oct 30;12(1):94. doi: 10.1186/s13073-020-00786-7. Genome Med. 2020. PMID: 33121525 Free PMC article.
Identification of tissue-specific and common methylation quantitative trait loci in healthy individuals using MAGAR.
Scherer M, Gasparoni G, Rahmouni S, Shashkova T, Arnoux M, Louis E, Nostaeva A, Avalos D, Dermitzakis ET, Aulchenko YS, Lengauer T, Lyons PA, Georges M, Walter J. Scherer M, et al. Among authors: gasparoni g. Epigenetics Chromatin. 2021 Sep 16;14(1):44. doi: 10.1186/s13072-021-00415-6. Epigenetics Chromatin. 2021. PMID: 34530905 Free PMC article.
Transmission of trained immunity and heterologous resistance to infections across generations.
Katzmarski N, Domínguez-Andrés J, Cirovic B, Renieris G, Ciarlo E, Le Roy D, Lepikhov K, Kattler K, Gasparoni G, Händler K, Theis H, Beyer M, van der Meer JWM, Joosten LAB, Walter J, Schultze JL, Roger T, Giamarellos-Bourboulis EJ, Schlitzer A, Netea MG. Katzmarski N, et al. Among authors: gasparoni g. Nat Immunol. 2021 Nov;22(11):1382-1390. doi: 10.1038/s41590-021-01052-7. Epub 2021 Oct 18. Nat Immunol. 2021. PMID: 34663978
Reply to: 'Lack of evidence for intergenerational inheritance of immune resistance to infections'.
Katzmarski N, Domínguez-Andrés J, Cirovic B, Renieris G, Ciarlo E, Le Roy D, Lepikhov K, Kattler K, Gasparoni G, Händler K, Theis H, Beyer M, van der Meer JWM, Joosten LAB, Walter J, Schultze JL, Roger T, Giamarellos-Bourboulis EJ, Schlitzer A, Netea MG. Katzmarski N, et al. Among authors: gasparoni g. Nat Immunol. 2022 Feb;23(2):208-209. doi: 10.1038/s41590-021-01103-z. Epub 2022 Jan 20. Nat Immunol. 2022. PMID: 35058615 No abstract available.
Author Correction: Transmission of trained immunity and heterologous resistance to infections across generations.
Katzmarski N, Domínguez-Andrés J, Cirovic B, Renieris G, Ciarlo E, Le Roy D, Lepikhov K, Kattler K, Gasparoni G, Händler K, Theis H, Beyer M, van der Meer JWM, Joosten LAB, Walter J, Schultze JL, Roger T, Giamarellos-Bourboulis EJ, Schlitzer A, Netea MG. Katzmarski N, et al. Among authors: gasparoni g. Nat Immunol. 2023 Feb;24(2):371-372. doi: 10.1038/s41590-023-01426-z. Nat Immunol. 2023. PMID: 36653441 No abstract available.
80 results