Garza DR - Search Results

1

Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes.

Garza DR, von Meijenfeldt FAB, van Dijk B, Boleij A, Huynen MA, Dutilh BE. Garza DR, et al. BMC Ecol Evol. 2022 Aug 16;22(1):101. doi: 10.1186/s12862-022-02052-3. BMC Ecol Evol. 2022. PMID: 35974327 Free PMC article.

2

Genome-wide study of the defective sucrose fermenter strain of Vibrio cholerae from the Latin American cholera epidemic.

Garza DR, Thompson CC, Loureiro EC, Dutilh BE, Inada DT, Junior EC, Cardoso JF, Nunes MR, de Lima CP, Silvestre RV, Nunes KN, Santos EC, Edwards RA, Vicente AC, de Sá Morais LL. Garza DR, et al. PLoS One. 2012;7(5):e37283. doi: 10.1371/journal.pone.0037283. Epub 2012 May 25. PLoS One. 2012. PMID: 22662140 Free PMC article.

3

Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions.

Dutilh BE, Thompson CC, Vicente AC, Marin MA, Lee C, Silva GG, Schmieder R, Andrade BG, Chimetto L, Cuevas D, Garza DR, Okeke IN, Aboderin AO, Spangler J, Ross T, Dinsdale EA, Thompson FL, Harkins TT, Edwards RA. Dutilh BE, et al. Among authors: garza dr. BMC Genomics. 2014 Aug 5;15(1):654. doi: 10.1186/1471-2164-15-654. BMC Genomics. 2014. PMID: 25096633 Free PMC article.

4

From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems.

Garza DR, Dutilh BE. Garza DR, et al. Cell Mol Life Sci. 2015 Nov;72(22):4287-308. doi: 10.1007/s00018-015-2004-1. Epub 2015 Aug 9. Cell Mol Life Sci. 2015. PMID: 26254872 Free PMC article. Review.

5

Towards predicting the environmental metabolome from metagenomics with a mechanistic model.

Garza DR, van Verk MC, Huynen MA, Dutilh BE. Garza DR, et al. Nat Microbiol. 2018 Apr;3(4):456-460. doi: 10.1038/s41564-018-0124-8. Epub 2018 Mar 12. Nat Microbiol. 2018. PMID: 29531366

6

Metabolic models predict bacterial passengers in colorectal cancer.

Garza DR, Taddese R, Wirbel J, Zeller G, Boleij A, Huynen MA, Dutilh BE. Garza DR, et al. Cancer Metab. 2020 Feb 10;8:3. doi: 10.1186/s40170-020-0208-9. eCollection 2020. Cancer Metab. 2020. PMID: 32055399 Free PMC article.

7

Growth rate alterations of human colorectal cancer cells by 157 gut bacteria.

Taddese R, Garza DR, Ruiter LN, de Jonge MI, Belzer C, Aalvink S, Nagtegaal ID, Dutilh BE, Boleij A. Taddese R, et al. Among authors: garza dr. Gut Microbes. 2020 Nov 9;12(1):1-20. doi: 10.1080/19490976.2020.1799733. Gut Microbes. 2020. PMID: 32915102 Free PMC article.

8

Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studies.

Meerstein-Kessel L, Venhuizen J, Garza D, Proellochs NI, Vos EJ, Obiero JM, Felgner PL, Sauerwein RW, Peters M, Yang ASP, Huynen MA. Meerstein-Kessel L, et al. PLoS Comput Biol. 2021 Apr 30;17(4):e1008067. doi: 10.1371/journal.pcbi.1008067. eCollection 2021 Apr. PLoS Comput Biol. 2021. PMID: 33930021 Free PMC article.

9

Optimized bacterial DNA isolation method for microbiome analysis of human tissues.

Bruggeling CE, Garza DR, Achouiti S, Mes W, Dutilh BE, Boleij A. Bruggeling CE, et al. Among authors: garza dr. Microbiologyopen. 2021 Jun;10(3):e1191. doi: 10.1002/mbo3.1191. Microbiologyopen. 2021. PMID: 34180607 Free PMC article.

10

A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology.

van Esveld SL, Meerstein-Kessel L, Boshoven C, Baaij JF, Barylyuk K, Coolen JPM, van Strien J, Duim RAJ, Dutilh BE, Garza DR, Letterie M, Proellochs NI, de Ridder MN, Venkatasubramanian PB, de Vries LE, Waller RF, Kooij TWA, Huynen MA. van Esveld SL, et al. Among authors: garza dr. mSphere. 2021 Oct 27;6(5):e0061421. doi: 10.1128/mSphere.00614-21. Epub 2021 Sep 8. mSphere. 2021. PMID: 34494883 Free PMC article.

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