Gardy JL - Search Results

1

Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria.

Rey S, Gardy JL, Brinkman FS. Rey S, et al. Among authors: gardy jl. BMC Genomics. 2005 Nov 17;6:162. doi: 10.1186/1471-2164-6-162. BMC Genomics. 2005. PMID: 16288665 Free PMC article.

2

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis.

Gardy JL, Laird MR, Chen F, Rey S, Walsh CJ, Ester M, Brinkman FS. Gardy JL, et al. Bioinformatics. 2005 Mar 1;21(5):617-23. doi: 10.1093/bioinformatics/bti057. Epub 2004 Oct 22. Bioinformatics. 2005. PMID: 15501914

3

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria.

Gardy JL, Spencer C, Wang K, Ester M, Tusnády GE, Simon I, Hua S, deFays K, Lambert C, Nakai K, Brinkman FS. Gardy JL, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3613-7. doi: 10.1093/nar/gkg602. Nucleic Acids Res. 2003. PMID: 12824378 Free PMC article.

4

PSORTdb: a protein subcellular localization database for bacteria.

Rey S, Acab M, Gardy JL, Laird MR, deFays K, Lambert C, Brinkman FS. Rey S, et al. Among authors: gardy jl. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D164-8. doi: 10.1093/nar/gki027. Nucleic Acids Res. 2005. PMID: 15608169 Free PMC article.

5

Methods for predicting bacterial protein subcellular localization.

Gardy JL, Brinkman FS. Gardy JL, et al. Nat Rev Microbiol. 2006 Oct;4(10):741-51. doi: 10.1038/nrmicro1494. Epub 2006 Sep 11. Nat Rev Microbiol. 2006. PMID: 16964270 Review.

6

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.

Lewenza S, Gardy JL, Brinkman FS, Hancock RE. Lewenza S, et al. Among authors: gardy jl. Genome Res. 2005 Feb;15(2):321-9. doi: 10.1101/gr.3257305. Genome Res. 2005. PMID: 15687295 Free PMC article.

7

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Lynn DJ, Winsor GL, Chan C, Richard N, Laird MR, Barsky A, Gardy JL, Roche FM, Chan TH, Shah N, Lo R, Naseer M, Que J, Yau M, Acab M, Tulpan D, Whiteside MD, Chikatamarla A, Mah B, Munzner T, Hokamp K, Hancock RE, Brinkman FS. Lynn DJ, et al. Among authors: gardy jl. Mol Syst Biol. 2008;4:218. doi: 10.1038/msb.2008.55. Epub 2008 Sep 2. Mol Syst Biol. 2008. PMID: 18766178 Free PMC article.

8

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

Vivona S, Gardy JL, Ramachandran S, Brinkman FS, Raghava GP, Flower DR, Filippini F. Vivona S, et al. Among authors: gardy jl. Trends Biotechnol. 2008 Apr;26(4):190-200. doi: 10.1016/j.tibtech.2007.12.006. Epub 2008 Feb 21. Trends Biotechnol. 2008. PMID: 18291542 Review.

9

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak.

Gardy JL, Johnston JC, Ho Sui SJ, Cook VJ, Shah L, Brodkin E, Rempel S, Moore R, Zhao Y, Holt R, Varhol R, Birol I, Lem M, Sharma MK, Elwood K, Jones SJ, Brinkman FS, Brunham RC, Tang P. Gardy JL, et al. N Engl J Med. 2011 Feb 24;364(8):730-9. doi: 10.1056/NEJMoa1003176. N Engl J Med. 2011. PMID: 21345102 Free article.

10

Enabling a systems biology approach to immunology: focus on innate immunity.

Gardy JL, Lynn DJ, Brinkman FS, Hancock RE. Gardy JL, et al. Trends Immunol. 2009 Jun;30(6):249-62. doi: 10.1016/j.it.2009.03.009. Epub 2009 May 8. Trends Immunol. 2009. PMID: 19428301 Review.

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