Galata V - Search Results

1

Functional meta-omics provide critical insights into long- and short-read assemblies.

Galata V, Busi SB, Kunath BJ, de Nies L, Calusinska M, Halder R, May P, Wilmes P, Laczny CC. Galata V, et al. Brief Bioinform. 2021 Nov 5;22(6):bbab330. doi: 10.1093/bib/bbab330. Brief Bioinform. 2021. PMID: 34453168 Free PMC article.

2

Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates.

Laczny CC, Galata V, Plum A, Posch AE, Keller A. Laczny CC, et al. Among authors: galata v. Brief Bioinform. 2019 May 21;20(3):857-865. doi: 10.1093/bib/bbx162. Brief Bioinform. 2019. PMID: 29220507

3

PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data.

de Nies L, Lopes S, Busi SB, Galata V, Heintz-Buschart A, Laczny CC, May P, Wilmes P. de Nies L, et al. Among authors: galata v. Microbiome. 2021 Feb 17;9(1):49. doi: 10.1186/s40168-020-00993-9. Microbiome. 2021. PMID: 33597026 Free PMC article.

4

Comparing genome versus proteome-based identification of clinical bacterial isolates.

Galata V, Backes C, Laczny CC, Hemmrich-Stanisak G, Li H, Smoot L, Posch AE, Schmolke S, Bischoff M, von Müller L, Plum A, Franke A, Keller A. Galata V, et al. Brief Bioinform. 2018 May 1;19(3):495-505. doi: 10.1093/bib/bbw122. Brief Bioinform. 2018. PMID: 28013236

5

BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation.

Laczny CC, Kiefer C, Galata V, Fehlmann T, Backes C, Keller A. Laczny CC, et al. Among authors: galata v. Nucleic Acids Res. 2017 Jul 3;45(W1):W171-W179. doi: 10.1093/nar/gkx348. Nucleic Acids Res. 2017. PMID: 28472498 Free PMC article.

6

Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11,087 Clinical Isolates.

Galata V, Laczny CC, Backes C, Hemmrich-Stanisak G, Schmolke S, Franke A, Meese E, Herrmann M, von Müller L, Plum A, Müller R, Stähler C, Posch AE, Keller A. Galata V, et al. Genomics Proteomics Bioinformatics. 2019 Apr;17(2):169-182. doi: 10.1016/j.gpb.2018.11.002. Epub 2019 May 14. Genomics Proteomics Bioinformatics. 2019. PMID: 31100356 Free PMC article.

7

Comparison of initial oral microbiomes of young adults with and without cavitated dentin caries lesions using an in situ biofilm model.

Rupf S, Laczny CC, Galata V, Backes C, Keller A, Umanskaya N, Erol A, Tierling S, Lo Porto C, Walter J, Kirsch J, Hannig M, Hannig C. Rupf S, et al. Among authors: galata v. Sci Rep. 2018 Sep 18;8(1):14010. doi: 10.1038/s41598-018-32361-x. Sci Rep. 2018. PMID: 30228377 Free PMC article.

8

Large-scale validation of miRNAs by disease association, evolutionary conservation and pathway activity.

Fehlmann T, Laufer T, Backes C, Kahramann M, Alles J, Fischer U, Minet M, Ludwig N, Kern F, Kehl T, Galata V, Düsterloh A, Schrörs H, Kohlhaas J, Bals R, Huwer H, Geffers L, Krüger R, Balling R, Lenhof HP, Meese E, Keller A. Fehlmann T, et al. Among authors: galata v. RNA Biol. 2019 Jan;16(1):93-103. doi: 10.1080/15476286.2018.1559689. Epub 2018 Dec 26. RNA Biol. 2019. PMID: 30567465 Free PMC article.

9

PLSDB: a resource of complete bacterial plasmids.

Galata V, Fehlmann T, Backes C, Keller A. Galata V, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D195-D202. doi: 10.1093/nar/gky1050. Nucleic Acids Res. 2019. PMID: 30380090 Free PMC article.

10

Prospect and challenge of detecting dynamic gene copy number increases in stem cells by whole genome sequencing.

Fischer U, Backes C, Fehlmann T, Galata V, Keller A, Meese E. Fischer U, et al. Among authors: galata v. J Mol Med (Berl). 2019 Aug;97(8):1099-1111. doi: 10.1007/s00109-019-01792-y. Epub 2019 May 27. J Mol Med (Berl). 2019. PMID: 31134286 Free PMC article.

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