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Large-scale assessment of pros and cons of autopsy-derived or tumor-matched tissues as the norms for gene expression analysis in cancers.
Sorokin M, Buzdin AA, Guryanova A, Efimov V, Suntsova MV, Zolotovskaia MA, Koroleva EV, Sekacheva MI, Tkachev VS, Garazha A, Kremenchutckaya K, Drobyshev A, Seryakov A, Gudkov A, Alekseenko IV, Rakitina O, Kostina MB, Vladimirova U, Moisseev A, Bulgin D, Radomskaya E, Shestakov V, Baklaushev VP, Prassolov V, Shegay PV, Li X, Poddubskaya EV, Gaifullin N. Sorokin M, et al. Among authors: gaifullin n. Comput Struct Biotechnol J. 2023 Aug 3;21:3964-3986. doi: 10.1016/j.csbj.2023.07.040. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37635765 Free PMC article.
Human-specific endogenous retroviral insert serves as an enhancer for the schizophrenia-linked gene PRODH.
Suntsova M, Gogvadze EV, Salozhin S, Gaifullin N, Eroshkin F, Dmitriev SE, Martynova N, Kulikov K, Malakhova G, Tukhbatova G, Bolshakov AP, Ghilarov D, Garazha A, Aliper A, Cantor CR, Solokhin Y, Roumiantsev S, Balaban P, Zhavoronkov A, Buzdin A. Suntsova M, et al. Among authors: gaifullin n. Proc Natl Acad Sci U S A. 2013 Nov 26;110(48):19472-7. doi: 10.1073/pnas.1318172110. Epub 2013 Nov 11. Proc Natl Acad Sci U S A. 2013. PMID: 24218577 Free PMC article.
MiRImpact, a new bioinformatic method using complete microRNA expression profiles to assess their overall influence on the activity of intracellular molecular pathways.
Artcibasova AV, Korzinkin MB, Sorokin MI, Shegay PV, Zhavoronkov AA, Gaifullin N, Alekseev BY, Vorobyev NV, Kuzmin DV, Kaprin АD, Borisov NM, Buzdin AA. Artcibasova AV, et al. Among authors: gaifullin n. Cell Cycle. 2016;15(5):689-98. doi: 10.1080/15384101.2016.1147633. Cell Cycle. 2016. PMID: 27027999 Free PMC article.
Data aggregation at the level of molecular pathways improves stability of experimental transcriptomic and proteomic data.
Borisov N, Suntsova M, Sorokin M, Garazha A, Kovalchuk O, Aliper A, Ilnitskaya E, Lezhnina K, Korzinkin M, Tkachev V, Saenko V, Saenko Y, Sokov DG, Gaifullin NM, Kashintsev K, Shirokorad V, Shabalina I, Zhavoronkov A, Mishra B, Cantor CR, Buzdin A. Borisov N, et al. Among authors: gaifullin nm. Cell Cycle. 2017 Oct 2;16(19):1810-1823. doi: 10.1080/15384101.2017.1361068. Epub 2017 Aug 21. Cell Cycle. 2017. PMID: 28825872 Free PMC article.
32 results