Gaffrey MJ - Search Results

1

Cell-type-specific transcriptomics uncovers spatial regulatory networks in bioenergy sorghum stems.

Fu J, McKinley B, James B, Chrisler W, Markillie LM, Gaffrey MJ, Mitchell HD, Riaz MR, Marcial B, Orr G, Swaminathan K, Mullet J, Marshall-Colon A. Fu J, et al. Among authors: gaffrey mj. Plant J. 2024 Feb 26. doi: 10.1111/tpj.16690. Online ahead of print. Plant J. 2024. PMID: 38407828

2

Capturing an Early Gene Induction Event during Wood Decay by the Brown Rot Fungus Rhodonia placenta.

Anderson CE, Zhang J, Markillie LM, Mitchell HD, Chrisler WB, Gaffrey MJ, Orr G, Schilling JS. Anderson CE, et al. Among authors: gaffrey mj. Appl Environ Microbiol. 2022 Apr 26;88(8):e0018822. doi: 10.1128/aem.00188-22. Epub 2022 Mar 29. Appl Environ Microbiol. 2022. PMID: 35348388 Free PMC article.

3

Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq.

Mitchell HD, Markillie LM, Chrisler WB, Gaffrey MJ, Hu D, Szymanski CJ, Xie Y, Melby ES, Dohnalkova A, Taylor RC, Grate EK, Cooley SK, McDermott JE, Heredia-Langner A, Orr G. Mitchell HD, et al. Among authors: gaffrey mj. ACS Nano. 2016 Nov 22;10(11):10173-10185. doi: 10.1021/acsnano.6b05452. Epub 2016 Oct 31. ACS Nano. 2016. PMID: 27788331

4

Reference genes for accurate normalization of gene expression in wood-decomposing fungi.

Zhang J, Mitchell HD, Markillie LM, Gaffrey MJ, Orr G, Schilling J. Zhang J, et al. Among authors: gaffrey mj. Fungal Genet Biol. 2019 Feb;123:33-40. doi: 10.1016/j.fgb.2018.11.005. Epub 2018 Dec 5. Fungal Genet Biol. 2019. PMID: 30529285

5

Distinctive carbon repression effects in the carbohydrate-selective wood decay fungus Rhodonia placenta.

Zhang J, Meng Markillie L, Mitchell HD, Gaffrey MJ, Orr G, Schilling JS. Zhang J, et al. Among authors: gaffrey mj. Fungal Genet Biol. 2022 Apr;159:103673. doi: 10.1016/j.fgb.2022.103673. Epub 2022 Feb 9. Fungal Genet Biol. 2022. PMID: 35150839 Free article.

6

Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells.

Cui Y, Hu D, Markillie LM, Chrisler WB, Gaffrey MJ, Ansong C, Sussel L, Orr G. Cui Y, et al. Among authors: gaffrey mj. Nucleic Acids Res. 2018 Jan 25;46(2):e7. doi: 10.1093/nar/gkx874. Nucleic Acids Res. 2018. PMID: 29040675 Free PMC article.

7

Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium.

Orellana R, Chaput G, Markillie LM, Mitchell H, Gaffrey M, Orr G, DeAngelis KM. Orellana R, et al. PLoS One. 2017 Oct 19;12(10):e0186440. doi: 10.1371/journal.pone.0186440. eCollection 2017. PLoS One. 2017. PMID: 29049419 Free PMC article.

8

Rosette core fungal resistance in Arabidopsis thaliana.

Dai Y, Ogilvie HA, Liu Y, Huang M, Markillie LM, Mitchell HD, Borrego EJ, Kolomiets MV, Gaffrey MJ, Orr G, Chehab EW, Mao WT, Braam J. Dai Y, et al. Among authors: gaffrey mj. Planta. 2019 Dec;250(6):1941-1953. doi: 10.1007/s00425-019-03273-5. Epub 2019 Sep 16. Planta. 2019. PMID: 31529398

9

Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography-Mass Spectrometry for High-Throughput Single-Cell Proteomics.

Williams SM, Liyu AV, Tsai CF, Moore RJ, Orton DJ, Chrisler WB, Gaffrey MJ, Liu T, Smith RD, Kelly RT, Pasa-Tolic L, Zhu Y. Williams SM, et al. Among authors: gaffrey mj. Anal Chem. 2020 Aug 4;92(15):10588-10596. doi: 10.1021/acs.analchem.0c01551. Epub 2020 Jul 22. Anal Chem. 2020. PMID: 32639140 Free PMC article.

10

Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment.

Shi T, Gao Y, Gaffrey MJ, Nicora CD, Fillmore TL, Chrisler WB, Gritsenko MA, Wu C, He J, Bloodsworth KJ, Zhao R, Camp DG 2nd, Liu T, Rodland KD, Smith RD, Wiley HS, Qian WJ. Shi T, et al. Among authors: gaffrey mj. Anal Chem. 2015 Jan 20;87(2):1103-10. doi: 10.1021/ac503797x. Epub 2014 Dec 31. Anal Chem. 2015. PMID: 25517423 Free PMC article.

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