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Unrooted tree reconciliation: a unified approach.
Górecki P, Eulenstein O, Tiuryn J. Górecki P, et al. IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar-Apr;10(2):522-36. doi: 10.1109/TCBB.2013.22. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 23929875
DrML: probabilistic modeling of gene duplications.
Górecki P, Eulenstein O. Górecki P, et al. J Comput Biol. 2014 Jan;21(1):89-98. doi: 10.1089/cmb.2013.0078. Epub 2013 Sep 27. J Comput Biol. 2014. PMID: 24073895 Free PMC article.
Refining discordant gene trees.
Górecki P, Eulenstein O. Górecki P, et al. BMC Bioinformatics. 2014;15 Suppl 13(Suppl 13):S3. doi: 10.1186/1471-2105-15-S13-S3. Epub 2014 Nov 13. BMC Bioinformatics. 2014. PMID: 25434729 Free PMC article.
Maximizing Deep Coalescence Cost.
Górecki P, Eulenstein O. Górecki P, et al. IEEE/ACM Trans Comput Biol Bioinform. 2014 Jan-Feb;11(1):231-42. doi: 10.1109/TCBB.2013.144. IEEE/ACM Trans Comput Biol Bioinform. 2014. PMID: 26355521
Gene Tree Diameter for Deep Coalescence.
Górecki P, Eulenstein O. Górecki P, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 Jan-Feb;12(1):155-65. doi: 10.1109/TCBB.2014.2351795. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357086
Genomic duplication problems for unrooted gene trees.
Paszek J, Górecki P. Paszek J, et al. Among authors: gorecki p. BMC Genomics. 2016 Jan 11;17 Suppl 1(Suppl 1):15. doi: 10.1186/s12864-015-2308-4. BMC Genomics. 2016. PMID: 26818591 Free PMC article.
114 results