Fuxman Bass JI - Search Results

1

Intragenic proviral elements support transcription of defective HIV-1 proviruses.

Kuniholm J, Armstrong E, Bernabe B, Coote C, Berenson A, Patalano SD, Olson A, He X, Lin NH, Fuxman Bass JI, Henderson AJ. Kuniholm J, et al. Among authors: fuxman bass ji. PLoS Pathog. 2021 Dec 28;17(12):e1009982. doi: 10.1371/journal.ppat.1009982. eCollection 2021 Dec. PLoS Pathog. 2021. PMID: 34962974 Free PMC article.

2

Comprehensive mapping of the human cytokine gene regulatory network.

Santoso CS, Li Z, Lal S, Yuan S, Gan KA, Agosto LM, Liu X, Pro SC, Sewell JA, Henderson A, Atianand MK, Fuxman Bass JI. Santoso CS, et al. Among authors: fuxman bass ji. Nucleic Acids Res. 2020 Dec 2;48(21):12055-12073. doi: 10.1093/nar/gkaa1055. Nucleic Acids Res. 2020. PMID: 33179750 Free PMC article.

3

A functional screen identifies transcriptional networks that regulate HIV-1 and HIV-2.

Pedro KD, Agosto LM, Sewell JA, Eberenz KA, He X, Fuxman Bass JI, Henderson AJ. Pedro KD, et al. Among authors: fuxman bass ji. Proc Natl Acad Sci U S A. 2021 Mar 16;118(11):e2012835118. doi: 10.1073/pnas.2012835118. Proc Natl Acad Sci U S A. 2021. PMID: 33836568 Free PMC article.

4

Compendium of human transcription factor effector domains.

Soto LF, Li Z, Santoso CS, Berenson A, Ho I, Shen VX, Yuan S, Fuxman Bass JI. Soto LF, et al. Among authors: fuxman bass ji. Mol Cell. 2022 Feb 3;82(3):514-526. doi: 10.1016/j.molcel.2021.11.007. Epub 2021 Dec 3. Mol Cell. 2022. PMID: 34863368 Free PMC article. Review.

5

Enhanced Yeast One-Hybrid Assays to Study Protein-DNA Interactions.

Berenson A, Fuxman Bass JI. Berenson A, et al. Among authors: fuxman bass ji. Methods Mol Biol. 2023;2599:11-20. doi: 10.1007/978-1-0716-2847-8_2. Methods Mol Biol. 2023. PMID: 36427139

6

Paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism across transcription factors.

Berenson A, Lane R, Soto-Ugaldi LF, Patel M, Ciausu C, Li Z, Chen Y, Shah S, Santoso C, Liu X, Spirohn K, Hao T, Hill DE, Vidal M, Fuxman Bass JI. Berenson A, et al. Among authors: fuxman bass ji. Nat Commun. 2023 Oct 18;14(1):6570. doi: 10.1038/s41467-023-42445-6. Nat Commun. 2023. PMID: 37853017 Free PMC article.

7

Identification of conserved skeletal enhancers associated with craniosynostosis risk genes.

He 何璇 XA, Berenson A, Bernard M, Weber C, Cook LE, Visel A, Fuxman Bass JI, Fisher S. He 何璇 XA, et al. Among authors: fuxman bass ji. Hum Mol Genet. 2024 May 4;33(10):837-849. doi: 10.1093/hmg/ddad182. Hum Mol Genet. 2024. PMID: 37883470

8

Human gene-centered transcription factor networks for enhancers and disease variants.

Fuxman Bass JI, Sahni N, Shrestha S, Garcia-Gonzalez A, Mori A, Bhat N, Yi S, Hill DE, Vidal M, Walhout AJM. Fuxman Bass JI, et al. Cell. 2015 Apr 23;161(3):661-673. doi: 10.1016/j.cell.2015.03.003. Cell. 2015. PMID: 25910213 Free PMC article.

9

Discovering human transcription factor physical interactions with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays.

Shrestha S, Sewell JA, Santoso CS, Forchielli E, Carrasco Pro S, Martinez M, Fuxman Bass JI. Shrestha S, et al. Among authors: fuxman bass ji. Genome Res. 2019 Sep;29(9):1533-1544. doi: 10.1101/gr.248823.119. Genome Res. 2019. PMID: 31481462 Free PMC article.

10

Prediction of genome-wide effects of single nucleotide variants on transcription factor binding.

Carrasco Pro S, Bulekova K, Gregor B, Labadorf A, Fuxman Bass JI. Carrasco Pro S, et al. Among authors: fuxman bass ji. Sci Rep. 2020 Oct 19;10(1):17632. doi: 10.1038/s41598-020-74793-4. Sci Rep. 2020. PMID: 33077858 Free PMC article.

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