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SARS-CoV-2 variants of concern surveillance including Omicron using RT-PCR-based genotyping offers comparable performance to whole genome sequencing.
Vanoni S, Matulevicius A, Avdiu B, Scantamburlo G, Ulekleiv C, Brzoska PM, Furtado MR, Feenstra JDM, Rico A, Gandhi M, Giacobazzi E, Masi E, Paulmichl M, Nofziger C. Vanoni S, et al. Among authors: furtado mr. Front Cell Infect Microbiol. 2022 Nov 3;12:960065. doi: 10.3389/fcimb.2022.960065. eCollection 2022. Front Cell Infect Microbiol. 2022. PMID: 36405967 Free PMC article.
Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.
Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS. Driebe EM, et al. Among authors: furtado mr. PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015. PLoS One. 2015. PMID: 26161978 Free PMC article.
Progress toward an efficient panel of SNPs for ancestry inference.
Kidd KK, Speed WC, Pakstis AJ, Furtado MR, Fang R, Madbouly A, Maiers M, Middha M, Friedlaender FR, Kidd JR. Kidd KK, et al. Among authors: furtado mr. Forensic Sci Int Genet. 2014 May;10:23-32. doi: 10.1016/j.fsigen.2014.01.002. Epub 2014 Jan 15. Forensic Sci Int Genet. 2014. PMID: 24508742 Free article.
Haplotype structure and positive selection at TLR1.
Heffelfinger C, Pakstis AJ, Speed WC, Clark AP, Haigh E, Fang R, Furtado MR, Kidd KK, Snyder MP. Heffelfinger C, et al. Among authors: furtado mr. Eur J Hum Genet. 2014 Apr;22(4):551-7. doi: 10.1038/ejhg.2013.194. Epub 2013 Sep 4. Eur J Hum Genet. 2014. PMID: 24002163 Free PMC article.
Comparative analysis of genome sequences covering the seven cronobacter species.
Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ. Joseph S, et al. Among authors: furtado mr. PLoS One. 2012;7(11):e49455. doi: 10.1371/journal.pone.0049455. Epub 2012 Nov 16. PLoS One. 2012. PMID: 23166675 Free PMC article.
Assuring the quality of next-generation sequencing in clinical laboratory practice.
Gargis AS, Kalman L, Berry MW, Bick DP, Dimmock DP, Hambuch T, Lu F, Lyon E, Voelkerding KV, Zehnbauer BA, Agarwala R, Bennett SF, Chen B, Chin EL, Compton JG, Das S, Farkas DH, Ferber MJ, Funke BH, Furtado MR, Ganova-Raeva LM, Geigenmüller U, Gunselman SJ, Hegde MR, Johnson PL, Kasarskis A, Kulkarni S, Lenk T, Liu CS, Manion M, Manolio TA, Mardis ER, Merker JD, Rajeevan MS, Reese MG, Rehm HL, Simen BB, Yeakley JM, Zook JM, Lubin IM. Gargis AS, et al. Among authors: furtado mr. Nat Biotechnol. 2012 Nov;30(11):1033-6. doi: 10.1038/nbt.2403. Nat Biotechnol. 2012. PMID: 23138292 Free PMC article. No abstract available.
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