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Long-term dataset on aquatic responses to concurrent climate change and recovery from acidification.
Leach TH, Winslow LA, Acker FW, Bloomfield JA, Boylen CW, Bukaveckas PA, Charles DF, Daniels RA, Driscoll CT, Eichler LW, Farrell JL, Funk CS, Goodrich CA, Michelena TM, Nierzwicki-Bauer SA, Roy KM, Shaw WH, Sutherland JW, Swinton MW, Winkler DA, Rose KC. Leach TH, et al. Among authors: funk cs. Sci Data. 2018 Apr 10;5:180059. doi: 10.1038/sdata.2018.59. Sci Data. 2018. PMID: 29633989 Free PMC article.
Widespread diminishing anthropogenic effects on calcium in freshwaters.
Weyhenmeyer GA, Hartmann J, Hessen DO, Kopáček J, Hejzlar J, Jacquet S, Hamilton SK, Verburg P, Leach TH, Schmid M, Flaim G, Nõges T, Nõges P, Wentzky VC, Rogora M, Rusak JA, Kosten S, Paterson AM, Teubner K, Higgins SN, Lawrence G, Kangur K, Kokorite I, Cerasino L, Funk C, Harvey R, Moatar F, de Wit HA, Zechmeister T. Weyhenmeyer GA, et al. Sci Rep. 2019 Jul 18;9(1):10450. doi: 10.1038/s41598-019-46838-w. Sci Rep. 2019. PMID: 31320731 Free PMC article.
LAGOS-NE: a multi-scaled geospatial and temporal database of lake ecological context and water quality for thousands of US lakes.
Soranno PA, Bacon LC, Beauchene M, Bednar KE, Bissell EG, Boudreau CK, Boyer MG, Bremigan MT, Carpenter SR, Carr JW, Cheruvelil KS, Christel ST, Claucherty M, Collins SM, Conroy JD, Downing JA, Dukett J, Fergus CE, Filstrup CT, Funk C, Gonzalez MJ, Green LT, Gries C, Halfman JD, Hamilton SK, Hanson PC, Henry EN, Herron EM, Hockings C, Jackson JR, Jacobson-Hedin K, Janus LL, Jones WW, Jones JR, Keson CM, King KBS, Kishbaugh SA, Lapierre JF, Lathrop B, Latimore JA, Lee Y, Lottig NR, Lynch JA, Matthews LJ, McDowell WH, Moore KEB, Neff BP, Nelson SJ, Oliver SK, Pace ML, Pierson DC, Poisson AC, Pollard AI, Post DM, Reyes PO, Rosenberry DO, Roy KM, Rudstam LG, Sarnelle O, Schuldt NJ, Scott CE, Skaff NK, Smith NJ, Spinelli NR, Stachelek JJ, Stanley EH, Stoddard JL, Stopyak SB, Stow CA, Tallant JM, Tan PN, Thorpe AP, Vanni MJ, Wagner T, Watkins G, Weathers KC, Webster KE, White JD, Wilmes MK, Yuan S. Soranno PA, et al. Gigascience. 2017 Dec 1;6(12):1-22. doi: 10.1093/gigascience/gix101. Gigascience. 2017. PMID: 29053868 Free PMC article.
Venlafaxine's therapeutic reference range in the treatment of depression revised: a systematic review and meta-analysis.
Lense XM, Hiemke C, Funk CSM, Havemann-Reinecke U, Hefner G, Menke A, Mössner R, Riemer TG, Scherf-Clavel M, Schoretsanitis G, Gründer G, Hart XM. Lense XM, et al. Among authors: funk csm. Psychopharmacology (Berl). 2024 Feb;241(2):275-289. doi: 10.1007/s00213-023-06484-7. Epub 2023 Oct 19. Psychopharmacology (Berl). 2024. PMID: 37857898 Free PMC article.
An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A… See abstract for full author list ➔ Jiang Y, et al. Among authors: funk cs. Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6. Genome Biol. 2016. PMID: 27604469 Free PMC article.
A close look at protein function prediction evaluation protocols.
Kahanda I, Funk CS, Ullah F, Verspoor KM, Ben-Hur A. Kahanda I, et al. Among authors: funk cs. Gigascience. 2015 Sep 14;4:41. doi: 10.1186/s13742-015-0082-5. eCollection 2015. Gigascience. 2015. PMID: 26380075 Free PMC article.
13 results