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sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.
Aparicio-Puerta E, Gómez-Martín C, Giannoukakos S, Medina JM, Scheepbouwer C, García-Moreno A, Carmona-Saez P, Fromm B, Pegtel M, Keller A, Marchal JA, Hackenberg M. Aparicio-Puerta E, et al. Among authors: fromm b. Nucleic Acids Res. 2022 Jul 5;50(W1):W710-W717. doi: 10.1093/nar/gkac363. Nucleic Acids Res. 2022. PMID: 35556129 Free PMC article.
A comprehensive profile of circulating RNAs in human serum.
Umu SU, Langseth H, Bucher-Johannessen C, Fromm B, Keller A, Meese E, Lauritzen M, Leithaug M, Lyle R, Rounge TB. Umu SU, et al. Among authors: fromm b. RNA Biol. 2018 Feb 1;15(2):242-250. doi: 10.1080/15476286.2017.1403003. Epub 2017 Dec 8. RNA Biol. 2018. PMID: 29219730 Free PMC article.
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: fromm b. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
MirGeneDB 2.0: the metazoan microRNA complement.
Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. Fromm B, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D132-D141. doi: 10.1093/nar/gkz885. Nucleic Acids Res. 2020. PMID: 31598695 Free PMC article.
MirGeneDB 2.0: the metazoan microRNA complement.
Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. Fromm B, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D1172. doi: 10.1093/nar/gkz1016. Nucleic Acids Res. 2020. PMID: 31642479 Free PMC article. No abstract available.
Quo vadis microRNAs?
Fromm B, Keller A, Yang X, Friedlander MR, Peterson KJ, Griffiths-Jones S. Fromm B, et al. Trends Genet. 2020 Jul;36(7):461-463. doi: 10.1016/j.tig.2020.03.007. Epub 2020 Apr 16. Trends Genet. 2020. PMID: 32544447
Encyclopedia of tools for the analysis of miRNA isoforms.
Schmartz GP, Kern F, Fehlmann T, Wagner V, Fromm B, Keller A. Schmartz GP, et al. Among authors: fromm b. Brief Bioinform. 2021 Jul 20;22(4):bbaa346. doi: 10.1093/bib/bbaa346. Brief Bioinform. 2021. PMID: 33313643
In Silico Analysis of Micro-RNA Sequencing Data.
Aparicio-Puerta E, Fromm B, Hackenberg M, Halushka MK. Aparicio-Puerta E, et al. Among authors: fromm b. Methods Mol Biol. 2021;2284:231-251. doi: 10.1007/978-1-0716-1307-8_13. Methods Mol Biol. 2021. PMID: 33835446
MirGeneDB 2.1: toward a complete sampling of all major animal phyla.
Fromm B, Høye E, Domanska D, Zhong X, Aparicio-Puerta E, Ovchinnikov V, Umu SU, Chabot PJ, Kang W, Aslanzadeh M, Tarbier M, Mármol-Sánchez E, Urgese G, Johansen M, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. Fromm B, et al. Nucleic Acids Res. 2022 Jan 7;50(D1):D204-D210. doi: 10.1093/nar/gkab1101. Nucleic Acids Res. 2022. PMID: 34850127 Free PMC article.
133 results