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Pervasive and non-random recombination in near full-length HIV genomes from Uganda.
Grant HE, Hodcroft EB, Ssemwanga D, Kitayimbwa JM, Yebra G, Esquivel Gomez LR, Frampton D, Gall A, Kellam P, de Oliveira T, Bbosa N, Nsubuga RN, Kibengo F, Kwan TH, Lycett S, Kao R, Robertson DL, Ratmann O, Fraser C, Pillay D, Kaleebu P, Leigh Brown AJ. Grant HE, et al. Among authors: frampton d. Virus Evol. 2020 Feb 11;6(1):veaa004. doi: 10.1093/ve/veaa004. eCollection 2020 Jan. Virus Evol. 2020. PMID: 32395255 Free PMC article.
A high HIV-1 strain variability in London, UK, revealed by full-genome analysis: Results from the ICONIC project.
Yebra G, Frampton D, Gallo Cassarino T, Raffle J, Hubb J, Ferns RB, Waters L, Tong CYW, Kozlakidis Z, Hayward A, Kellam P, Pillay D, Clark D, Nastouli E, Leigh Brown AJ; ICONIC Consortium. Yebra G, et al. Among authors: frampton d. PLoS One. 2018 Feb 1;13(2):e0192081. doi: 10.1371/journal.pone.0192081. eCollection 2018. PLoS One. 2018. PMID: 29389981 Free PMC article.
Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis.
Ratmann O, Grabowski MK, Hall M, Golubchik T, Wymant C, Abeler-Dörner L, Bonsall D, Hoppe A, Brown AL, de Oliveira T, Gall A, Kellam P, Pillay D, Kagaayi J, Kigozi G, Quinn TC, Wawer MJ, Laeyendecker O, Serwadda D, Gray RH, Fraser C; PANGEA Consortium and Rakai Health Sciences Program. Ratmann O, et al. Nat Commun. 2019 Mar 29;10(1):1411. doi: 10.1038/s41467-019-09139-4. Nat Commun. 2019. PMID: 30926780 Free PMC article.
Nosocomial transmission of influenza: A retrospective cross-sectional study using next generation sequencing at a hospital in England (2012-2014).
Blackburn RM, Frampton D, Smith CM, Fragaszy EB, Watson SJ, Ferns RB, Binter Š, Coen PG, Grant P, Shallcross LJ, Kozlakidis Z, Pillay D, Kellam P, Hué S, Nastouli E, Hayward AC; ICONIC group. Blackburn RM, et al. Among authors: frampton d. Influenza Other Respir Viruses. 2019 Nov;13(6):556-563. doi: 10.1111/irv.12679. Epub 2019 Sep 19. Influenza Other Respir Viruses. 2019. PMID: 31536169 Free PMC article.
Recombination Analysis of Near Full-Length HIV-1 Sequences and the Identification of a Potential New Circulating Recombinant Form from Rakai, Uganda.
Capoferri AA, Lamers SL, Grabowski MK, Rose R, Wawer MJ, Serwadda D, Gray RH, Quinn TC, Kigozi G, Kagaayi J, Laeyendecker O; Rakai Health Sciences Program and the PANGEA Consortium. Capoferri AA, et al. AIDS Res Hum Retroviruses. 2020 Jun;36(6):467-474. doi: 10.1089/AID.2019.0150. Epub 2020 Mar 2. AIDS Res Hum Retroviruses. 2020. PMID: 31914792 Free PMC article.
Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda.
Ratmann O, Kagaayi J, Hall M, Golubchick T, Kigozi G, Xi X, Wymant C, Nakigozi G, Abeler-Dörner L, Bonsall D, Gall A, Hoppe A, Kellam P, Bazaale J, Kalibbala S, Laeyendecker O, Lessler J, Nalugoda F, Chang LW, de Oliveira T, Pillay D, Quinn TC, Reynolds SJ, Spencer SEF, Ssekubugu R, Serwadda D, Wawer MJ, Gray RH, Fraser C, Grabowski MK; Rakai Health Sciences Program and the Pangea HIV Consortium. Ratmann O, et al. Lancet HIV. 2020 Mar;7(3):e173-e183. doi: 10.1016/S2352-3018(19)30378-9. Epub 2020 Jan 14. Lancet HIV. 2020. PMID: 31953184 Free PMC article.
57 results