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kmerDB: A database encompassing the set of genomic and proteomic sequence information for each species.
Mouratidis I, Baltoumas FA, Chantzi N, Patsakis M, Chan CSY, Montgomery A, Konnaris MA, Aplakidou E, Georgakopoulos GC, Das A, Chartoumpekis DV, Kovac J, Pavlopoulos GA, Georgakopoulos-Soares I. Mouratidis I, et al. Among authors: baltoumas fa. Comput Struct Biotechnol J. 2024 Apr 21;23:1919-1928. doi: 10.1016/j.csbj.2024.04.050. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 38711760 Free PMC article.
MPRAbase: A Massively Parallel Reporter Assay Database.
Zhao J, Baltoumas FA, Konnaris MA, Mouratidis I, Liu Z, Sims J, Agarwal V, Pavlopoulos GA, Georgakopoulos-Soares I, Ahituv N. Zhao J, et al. Among authors: baltoumas fa. bioRxiv [Preprint]. 2023 Nov 22:2023.11.19.567742. doi: 10.1101/2023.11.19.567742. bioRxiv. 2023. PMID: 38045264 Free PMC article. Preprint.
Unraveling the functional dark matter through global metagenomics.
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E; Novel Metagenome Protein Families Consortium; Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC. Pavlopoulos GA, et al. Among authors: baltoumas fa. Nature. 2023 Oct;622(7983):594-602. doi: 10.1038/s41586-023-06583-7. Epub 2023 Oct 11. Nature. 2023. PMID: 37821698 Free PMC article.
Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration.
Kokoli M, Karatzas E, Baltoumas FA, Schneider R, Pafilis E, Paragkamian S, Doncheva NT, Jensen LJ, Pavlopoulos GA. Kokoli M, et al. Among authors: baltoumas fa. NAR Genom Bioinform. 2023 May 30;5(2):lqad053. doi: 10.1093/nargab/lqad053. eCollection 2023 Jun. NAR Genom Bioinform. 2023. PMID: 37260509 Free PMC article.
27 results