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Reference databases for taxonomic assignment in metagenomics.
Santamaria M, Fosso B, Consiglio A, De Caro G, Grillo G, Licciulli F, Liuni S, Marzano M, Alonso-Alemany D, Valiente G, Pesole G. Santamaria M, et al. Among authors: fosso b. Brief Bioinform. 2012 Nov;13(6):682-95. doi: 10.1093/bib/bbs036. Epub 2012 Jul 10. Brief Bioinform. 2012. PMID: 22786784 Review.
Functional Integration of mRNA Translational Control Programs.
MacNicol MC, Cragle CE, Arumugam K, Fosso B, Pesole G, MacNicol AM. MacNicol MC, et al. Among authors: fosso b. Biomolecules. 2015 Jul 21;5(3):1580-99. doi: 10.3390/biom5031580. Biomolecules. 2015. PMID: 26197342 Free PMC article. Review.
BALB/c and C57BL/6 Mice Differ in Polyreactive IgA Abundance, which Impacts the Generation of Antigen-Specific IgA and Microbiota Diversity.
Fransen F, Zagato E, Mazzini E, Fosso B, Manzari C, El Aidy S, Chiavelli A, D'Erchia AM, Sethi MK, Pabst O, Marzano M, Moretti S, Romani L, Penna G, Pesole G, Rescigno M. Fransen F, et al. Among authors: fosso b. Immunity. 2015 Sep 15;43(3):527-40. doi: 10.1016/j.immuni.2015.08.011. Epub 2015 Sep 8. Immunity. 2015. PMID: 26362264 Free article.
Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space.
Marzano M, Fosso B, Manzari C, Grieco F, Intranuovo M, Cozzi G, Mulè G, Scioscia G, Valiente G, Tullo A, Sbisà E, Pesole G, Santamaria M. Marzano M, et al. Among authors: fosso b. PLoS One. 2016 Jun 14;11(6):e0157383. doi: 10.1371/journal.pone.0157383. eCollection 2016. PLoS One. 2016. PMID: 27299312 Free PMC article.
BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.
Hardisty AR, Bacall F, Beard N, Balcázar-Vargas MP, Balech B, Barcza Z, Bourlat SJ, De Giovanni R, de Jong Y, De Leo F, Dobor L, Donvito G, Fellows D, Guerra AF, Ferreira N, Fetyukova Y, Fosso B, Giddy J, Goble C, Güntsch A, Haines R, Ernst VH, Hettling H, Hidy D, Horváth F, Ittzés D, Ittzés P, Jones A, Kottmann R, Kulawik R, Leidenberger S, Lyytikäinen-Saarenmaa P, Mathew C, Morrison N, Nenadic A, de la Hidalga AN, Obst M, Oostermeijer G, Paymal E, Pesole G, Pinto S, Poigné A, Fernandez FQ, Santamaria M, Saarenmaa H, Sipos G, Sylla KH, Tähtinen M, Vicario S, Vos RA, Williams AR, Yilmaz P. Hardisty AR, et al. Among authors: fosso b. BMC Ecol. 2016 Oct 20;16(1):49. doi: 10.1186/s12898-016-0103-y. BMC Ecol. 2016. PMID: 27765035 Free PMC article.
The metagenomic data life-cycle: standards and best practices.
Ten Hoopen P, Finn RD, Bongo LA, Corre E, Fosso B, Meyer F, Mitchell A, Pelletier E, Pesole G, Santamaria M, Willassen NP, Cochrane G. Ten Hoopen P, et al. Among authors: fosso b. Gigascience. 2017 Aug 1;6(8):1-11. doi: 10.1093/gigascience/gix047. Gigascience. 2017. PMID: 28637310 Free PMC article.
Unbiased Taxonomic Annotation of Metagenomic Samples.
Fosso B, Pesole G, Rosselló F, Valiente G. Fosso B, et al. J Comput Biol. 2018 Mar;25(3):348-360. doi: 10.1089/cmb.2017.0144. Epub 2017 Oct 13. J Comput Biol. 2018. PMID: 29028181 Free PMC article.
46 results