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Geometric learning of knot topology.
Soft Matter. 2023 Dec 20;20(1):71-78. doi: 10.1039/d3sm01199b.
Soft Matter. 2023.
PMID: 37877330
Free PMC article.
Fluidification of Entanglements by a DNA Bending Protein.
Fosado YAG, Howard J, Weir S, Noy A, Leake MC, Michieletto D.
Fosado YAG, et al.
Phys Rev Lett. 2023 Feb 3;130(5):058203. doi: 10.1103/PhysRevLett.130.058203.
Phys Rev Lett. 2023.
PMID: 36800460
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Dynamic and facilitated binding of topoisomerase accelerates topological relaxation.
Michieletto D, Fosado YAG, Melas E, Baiesi M, Tubiana L, Orlandini E.
Michieletto D, et al. Among authors: fosado yag.
Nucleic Acids Res. 2022 May 6;50(8):4659-4668. doi: 10.1093/nar/gkac260.
Nucleic Acids Res. 2022.
PMID: 35474478
Free PMC article.
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Nonequilibrium dynamics and action at a distance in transcriptionally driven DNA supercoiling.
Fosado YAG, Michieletto D, Brackley CA, Marenduzzo D.
Fosado YAG, et al.
Proc Natl Acad Sci U S A. 2021 Mar 9;118(10):e1905215118. doi: 10.1073/pnas.1905215118.
Proc Natl Acad Sci U S A. 2021.
PMID: 33649196
Free PMC article.
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Dynamical Scaling and Phase Coexistence in Topologically Constrained DNA Melting.
Fosado YAG, Michieletto D, Marenduzzo D.
Fosado YAG, et al.
Phys Rev Lett. 2017 Sep 15;119(11):118002. doi: 10.1103/PhysRevLett.119.118002. Epub 2017 Sep 12.
Phys Rev Lett. 2017.
PMID: 28949232
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A single nucleotide resolution model for large-scale simulations of double stranded DNA.
Fosado YA, Michieletto D, Allan J, Brackley CA, Henrich O, Marenduzzo D.
Fosado YA, et al.
Soft Matter. 2016 Nov 28;12(47):9458-9470. doi: 10.1039/c6sm01859a.
Soft Matter. 2016.
PMID: 27845464
Free article.
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